Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F1 I1 R1 757 76.1 3598070 93.4% 3360597 108.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,796,337 C→T *150* (TAG→TAA)  ygaU ← uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,796,3370CT100.0% 234.5 / NA 72*150* (TAG→TAA) ygaUuncharacterized protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (34/38);  total (34/38)

GGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCAC  >  NC_000913/2796201‑2796464
                                                                                                                                        |                                                                                                                               
ggaggaTAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAattaatta                                                                                                                               <  2:561071/139‑1 (MQ=255)
ggaggaTAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAattaatta                                                                                                                               >  1:898336/1‑139 (MQ=255)
  aggaTAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAattact                                                                                                                             <  1:749744/139‑1 (MQ=255)
  aggaTAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAattact                                                                                                                             <  1:1010245/139‑1 (MQ=255)
    gaTAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTActct                                                                                                                           >  2:1549939/1‑139 (MQ=255)
        aaCACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCg                                                                                                                       <  2:1495006/139‑1 (MQ=255)
        aaCACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCg                                                                                                                       <  1:1720008/139‑1 (MQ=255)
                 aGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCa                                                                                                              >  1:515762/1‑139 (MQ=255)
                 aGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCa                                                                                                              <  2:1690598/139‑1 (MQ=255)
                        gACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGa                                                                                                                     <  2:831850/125‑1 (MQ=255)
                        gACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGa                                                                                                                     >  1:831850/1‑125 (MQ=255)
                          cccTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATCATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGcc                                                                                                     <  1:46641/139‑1 (MQ=255)
                             tGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGc                                                                                                      >  1:1553048/1‑135 (MQ=255)
                             tGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGc                                                                                                      <  2:1553048/135‑1 (MQ=255)
                              gACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCgg                                                                                                 >  2:145152/1‑139 (MQ=255)
                                   cggcggTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGc                                                                                                               >  2:1793294/1‑120 (MQ=255)
                                   cggcggTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGc                                                                                                               <  1:1793294/120‑1 (MQ=255)
                                              gcgcGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGACTACGCAACGCTTGCCCCGGATAAATTTTATCCggg                                                                                 <  1:954292/139‑1 (MQ=255)
                                                        ccGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCa                                                                       <  1:715543/139‑1 (MQ=255)
                                                        ccGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCa                                                                       <  1:236203/139‑1 (MQ=255)
                                                        ccGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCa                                                                       <  2:898336/139‑1 (MQ=255)
                                                          gcgcgcgcCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATc                                                                     <  2:318129/139‑1 (MQ=255)
                                                             cgcgcCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGAt                                                                                               <  2:1087940/110‑1 (MQ=255)
                                                             cgcgcCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGAt                                                                                               >  1:1087940/1‑110 (MQ=255)
                                                             cgcgcCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGt                                                                  >  1:93571/1‑139 (MQ=255)
                                                              gcgcCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGtt                                                                 >  2:343179/1‑139 (MQ=255)
                                                               cgcCAGTGAGTTAATGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGttt                                                                >  1:1238915/1‑139 (MQ=255)
                                                                             tGCGCCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGa                                                  <  2:515762/139‑1 (MQ=255)
                                                                               cgcCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGa                                                                                                >  2:1474219/1‑91 (MQ=255)
                                                                               cgcCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGa                                                                                                <  1:1474219/91‑1 (MQ=255)
                                                                               cgcCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTAtt                                                             <  2:977537/126‑1 (MQ=255)
                                                                               cgcCAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTAtt                                                             >  1:977537/1‑126 (MQ=255)
                                                                                 ccAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGAtttt                                              >  2:660931/1‑139 (MQ=255)
                                                                                 ccAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGAtttt                                              >  2:300289/1‑139 (MQ=255)
                                                                                  cAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCa                                                                       <  1:596050/113‑1 (MQ=255)
                                                                                  cAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCa                                                                       >  2:596050/1‑113 (MQ=255)
                                                                                  cAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTa                                             <  2:1238915/139‑1 (MQ=255)
                                                                                  cAGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTa                                             <  1:300289/139‑1 (MQ=255)
                                                                                  cAGCATTTACTGATGCCAATTCCCAATATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTCATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTa                                             <  1:660931/139‑1 (MQ=255)
                                                                                   aGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGa                                                                                                <  1:408081/87‑1 (MQ=255)
                                                                                   aGCATTTACTGATGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGa                                                                                                >  2:408081/1‑87 (MQ=255)
                                                                                            tgatgCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGAt                                   <  2:93571/135‑1 (MQ=255)
                                                                                                gCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCa                                                                       >  2:1254627/1‑99 (MQ=255)
                                                                                                gCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCa                                                                       <  1:1254627/99‑1 (MQ=255)
                                                                                                gCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGc                               >  1:1464563/1‑139 (MQ=255)
                                                                                                 ccAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCg                              <  1:145152/139‑1 (MQ=255)
                                                                                                  cAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGt                             <  1:343179/139‑1 (MQ=255)
                                                                                                    aTTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAg                                >  2:787299/1‑134 (MQ=255)
                                                                                                    aTTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAg                                <  1:787299/134‑1 (MQ=255)
                                                                                                    aTTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGt                             <  1:221412/137‑1 (MQ=255)
                                                                                                    aTTCCCATTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGt                             >  2:221412/1‑137 (MQ=255)
                                                                                                         cATTATCAAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGa                                                                                                                     >  1:781/1‑44 (MQ=38)
                                                                                                         cATTATCAAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGa                                                                                                                     <  2:781/44‑1 (MQ=255)
                                                                                                          aTTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGcc                                                                                                     <  2:1701159/59‑1 (MQ=255)
                                                                                                          aTTATCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGcc                                                                                                     >  1:1701159/1‑59 (MQ=255)
                                                                                                              tCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGt                             >  1:54263/1‑127 (MQ=255)
                                                                                                              tCCAGCAGGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGt                             <  2:54263/127‑1 (MQ=255)
                                                                                                                 agcagGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGtt              >  2:918609/1‑139 (MQ=255)
                                                                                                                   cagGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGa                    <  1:1652586/131‑1 (MQ=255)
                                                                                                                   cagGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGa                    >  2:1652586/1‑131 (MQ=255)
                                                                                                                   cagGCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTg            >  1:962801/1‑139 (MQ=255)
                                                                                                                     ggCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCggg                                                                                 >  1:236967/1‑68 (MQ=255)
                                                                                                                     ggCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCggg                                                                                 <  2:236967/68‑1 (MQ=255)
                                                                                                                     ggCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGa                                                     <  2:1522287/96‑1 (MQ=255)
                                                                                                                     ggCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGa                                                     >  1:1522287/1‑96 (MQ=255)
                                                                                                                      gCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCa                                                                       <  2:562525/77‑1 (MQ=255)
                                                                                                                      gCGATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCa                                                                       >  1:562525/1‑77 (MQ=255)
                                                                                                                        gATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGa                                                  <  1:709596/96‑1 (MQ=255)
                                                                                                                        gATGGCTGGCAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGa                                                  >  2:709596/1‑96 (MQ=255)
                                                                                                                          tggctggcAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGt                                         <  1:1648125/103‑1 (MQ=255)
                                                                                                                          tggctggcAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGt                             <  1:1626363/115‑1 (MQ=255)
                                                                                                                          tggctggcAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGt                             >  2:1626363/1‑115 (MQ=255)
                                                                                                                          tggctggcAATTAATTACTCTTCCGGAATACGCAACACTTCCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGt                                         >  2:1648125/1‑103 (MQ=255)
                                                                                                                             ctggcAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCAc  >  1:44529/1‑139 (MQ=255)
                                                                                                                                gcAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCAt                                                                      >  1:417359/1‑68 (MQ=255)
                                                                                                                                gcAATTAATTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCAt                                                                      <  2:417359/68‑1 (MQ=255)
                                                                                                                                        |                                                                                                                               
GGAGGATAAACACGATCAGCACCAGACCCTGACTGCGGCGGTACTGGCGCGAGATACCGCGCGCGCCAGTGAGTTAATGCGCCAGCATTTACTGACGCCAATTCCCATTATCCAGCAGGCGATGGCTGGCAATTAACTACTCTTCCGGAATACGCAACACTTGCCCCGGATAAATTTTATCCGGGCTTTTTAGCATCGGTTTATTCGCTTCGAAGATTTTATTGTACAGATTAGCGTTACCGTAGACCTGTTTGGAAATGGCAC  >  NC_000913/2796201‑2796464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A