Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F1 I1 R1 757 76.1 3598070 93.4% 3360597 108.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,474,391 G→A G90S (GGC→AGC)  bdcR → transcriptional repressor for divergent bdcA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,474,3910GA100.0% 359.5 / NA 109G90S (GGC→AGC) bdcRtranscriptional repressor for divergent bdcA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (51/58);  total (51/58)

Only 100 of 109 total aligned reads displayed.

ATCTTGGTATTAACCCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAGGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAGCGCGTGATATTGCCGTT  >  NC_000913/4474257‑4474516
                                                                                                                                      |                                                                                                                               
aTCTTGGTATTAACCCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGa                                                                                                                             >  1:306256/1‑139 (MQ=255)
  cTTGGTATTAACCCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGt                                                                                                                           <  2:563032/139‑1 (MQ=255)
           aaCCCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTg                                                                                                                  >  2:1209718/1‑139 (MQ=255)
            aCCCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTg                                                                                                                  <  1:273018/138‑1 (MQ=255)
            aCCCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTg                                                                                                                  >  2:273018/1‑138 (MQ=255)
            aCCCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGa                                                                                                                 <  1:1795861/139‑1 (MQ=255)
               ccccGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGt                                                                                                              >  1:717318/1‑139 (MQ=255)
                cccGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTa                                                                                                             >  2:1052359/1‑139 (MQ=255)
                 ccGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGc                                                                                                                         <  1:233791/126‑1 (MQ=255)
                 ccGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGc                                                                                                                         >  2:233791/1‑126 (MQ=255)
                 ccGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTAt                                                                                                            >  2:158576/1‑139 (MQ=255)
                        tctACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAg                                                                                                                >  2:1450926/1‑128 (MQ=255)
                        tctACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAg                                                                                                                <  1:1450926/128‑1 (MQ=255)
                           aCGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAgc                                                                                                >  2:504076/1‑139 (MQ=255)
                           aCGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAgc                                                                                                >  2:886542/1‑139 (MQ=255)
                            cgcgGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAgcg                                                                                               <  2:1324179/139‑1 (MQ=255)
                             gcgGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAgcgg                                                                                              <  2:336405/139‑1 (MQ=255)
                                 cTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCTGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGgcgcg                                                                                          <  1:265494/139‑1 (MQ=255)
                                 cTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGgcgcg                                                                                          <  1:1209718/139‑1 (MQ=255)
                                                   ggTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAgcg                                                                                               <  1:1422962/116‑1 (MQ=255)
                                                   ggTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAgcg                                                                                               >  2:1422962/1‑116 (MQ=255)
                                                             ccGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCgct                                                              >  2:674823/1‑139 (MQ=255)
                                                                  tACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTgcgc                                                               <  1:530695/133‑1 (MQ=255)
                                                                  tACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTgcgc                                                               >  2:530695/1‑133 (MQ=255)
                                                                    cTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTa                                                       <  2:391400/139‑1 (MQ=255)
                                                                    cTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTa                                                       <  2:362579/139‑1 (MQ=255)
                                                                     tCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTAt                                                      <  1:674823/139‑1 (MQ=255)
                                                                      cAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATg                                                     <  1:158576/139‑1 (MQ=255)
                                                                       aaTGAATACGTCGGTTCGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTAt                                                      >  2:1428250/1‑137 (MQ=255)
                                                                       aaTGAATACGTCGGTTCGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTAt                                                      <  1:1428250/137‑1 (MQ=255)
                                                                       aaTGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGc                                                                                                                         >  2:1361960/1‑72 (MQ=255)
                                                                       aaTGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGc                                                                                                                         <  1:1361960/72‑1 (MQ=255)
                                                                       aaTGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATgg                                                    >  2:666157/1‑139 (MQ=255)
                                                                         tGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTa                                                       <  2:1424738/134‑1 (MQ=255)
                                                                         tGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTa                                                       >  1:1424738/1‑134 (MQ=255)
                                                                            aTACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCgct                                                              >  2:845157/1‑124 (MQ=255)
                                                                            aTACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCgct                                                              <  1:845157/124‑1 (MQ=255)
                                                                            aTACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCtt                                               >  2:1313934/1‑139 (MQ=255)
                                                                             tACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTg                                              <  1:1313934/139‑1 (MQ=255)
                                                                              aCGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTg                                                                                                                  <  1:1433715/72‑1 (MQ=255)
                                                                              aCGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTg                                                                                                                  >  2:1433715/1‑72 (MQ=255)
                                                                               cGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTg                                                                                                                          >  2:815108/1‑63 (MQ=255)
                                                                               cGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTg                                                                                                                          <  1:815108/63‑1 (MQ=255)
                                                                               cGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGCAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGaa                                            >  2:955602/1‑139 (MQ=255)
                                                                               cGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGaa                                            <  1:966962/139‑1 (MQ=255)
                                                                                 tCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTg                                                                                                                          >  2:746646/1‑61 (MQ=255)
                                                                                 tCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTg                                                                                                                          <  1:746646/61‑1 (MQ=255)
                                                                                 tCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGa                                                                                                                 <  2:980984/70‑1 (MQ=255)
                                                                                 tCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGa                                                                                                                 >  1:980984/1‑70 (MQ=255)
                                                                                 tCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTgcg                                                                <  2:37667/117‑1 (MQ=255)
                                                                                 tCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTgcg                                                                >  1:37667/1‑117 (MQ=255)
                                                                                 tCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTa                                                       >  1:604197/1‑126 (MQ=255)
                                                                                 tCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTa                                                       <  2:604197/126‑1 (MQ=255)
                                                                                 tCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAgg                                          >  2:1334618/1‑139 (MQ=255)
                                                                                   ggTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGa                                                                                                                 <  1:189525/68‑1 (MQ=255)
                                                                                   ggTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGa                                                                                                                 >  2:189525/1‑68 (MQ=255)
                                                                                   ggTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGa                                                                                                                 <  1:1439209/68‑1 (MQ=255)
                                                                                     tACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGtt                                                                                                                   <  1:1075640/64‑1 (MQ=255)
                                                                                     tACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGtt                                                                                                                   >  2:1075640/1‑64 (MQ=255)
                                                                                     tACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAg                                                                                                                <  1:91555/67‑1 (MQ=255)
                                                                                     tACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAg                                                                                                                >  2:91555/1‑67 (MQ=255)
                                                                                       cGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCa                                    <  2:1338623/139‑1 (MQ=255)
                                                                                             cTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCa                              <  1:666157/139‑1 (MQ=255)
                                                                                             cTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCa                              <  1:955602/139‑1 (MQ=255)
                                                                                             cTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCa                              <  1:1232538/139‑1 (MQ=255)
                                                                                             cTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCa                              <  1:1052359/139‑1 (MQ=255)
                                                                                             cTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCACAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCa                              <  2:717318/139‑1 (MQ=255)
                                                                                               aTTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATg                            >  2:1457533/1‑139 (MQ=255)
                                                                                                     cTTGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCcac                      >  2:254382/1‑139 (MQ=255)
                                                                                                      ttGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTa                                                       <  1:1532304/105‑1 (MQ=255)
                                                                                                      ttGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTa                                                       >  2:1532304/1‑105 (MQ=255)
                                                                                                      ttGCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGATGGTATTCATAGTCATGATCcaca                     >  1:994691/1‑139 (MQ=255)
                                                                                                        gCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTg                                                                                                                  <  2:1035047/46‑1 (MQ=255)
                                                                                                        gCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTg                                                                                                                  >  1:1035047/1‑46 (MQ=255)
                                                                                                        gCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGat                                                                                     <  2:1662551/73‑1 (MQ=255)
                                                                                                        gCCGATATTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGat                                                                                     >  1:1662551/1‑73 (MQ=255)
                                                                                                              atTCTTCGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAGCGCGTg             >  1:1561608/1‑139 (MQ=255)
                                                                                                               ttcttcGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAGCGCGTGa            <  1:193651/139‑1 (MQ=255)
                                                                                                                   tcGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTa                                                       <  1:623855/92‑1 (MQ=255)
                                                                                                                   tcGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTa                                                       >  2:623855/1‑92 (MQ=255)
                                                                                                                    cGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCcac                      <  2:505832/124‑1 (MQ=255)
                                                                                                                    cGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCcac                      >  1:505832/1‑124 (MQ=255)
                                                                                                                    cGTGATGATCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAGCGCGTGATATTg       <  1:1457533/139‑1 (MQ=255)
                                                                                                                       gatgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATTAAAAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAGCGCGTGATATTGc      >  1:286085/1‑139 (MQ=255)
                                                                                                                       gatgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGgcgcg                                                                                          >  1:1534206/1‑53 (MQ=255)
                                                                                                                       gatgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGgcgcg                                                                                          <  2:1534206/53‑1 (MQ=255)
                                                                                                                       gatgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTgcgc                                                               <  1:1279365/80‑1 (MQ=255)
                                                                                                                       gatgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTgcgc                                                               >  2:1279365/1‑80 (MQ=255)
                                                                                                                       gatgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTgcg                                                                <  2:395550/79‑1 (MQ=255)
                                                                                                                       gatgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTgcg                                                                >  1:395550/1‑79 (MQ=255)
                                                                                                                       gatgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGaa                                            <  2:1632239/99‑1 (MQ=255)
                                                                                                                         tgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTgcgc                                                               >  1:640441/1‑78 (MQ=255)
                                                                                                                         tgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAGCGCGTGATATTGCCGtt  >  2:1131402/1‑139 (MQ=255)
                                                                                                                         tgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAGCGCGTGATATTGCCGtt  <  1:1334618/139‑1 (MQ=255)
                                                                                                                         tgatCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAGCGCGTGATATTGCCGtt  <  1:104621/139‑1 (MQ=255)
                                                                                                                           atCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAGCGCGTGATATTGCCg    >  1:1310400/1‑135 (MQ=255)
                                                                                                                           atCGTCCGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAGCGCGTGATATTGCCg    <  2:1310400/135‑1 (MQ=255)
                                                                                                                                ccGGTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTgcgc                                                               <  2:1057599/71‑1 (MQ=255)
                                                                                                                                ccGGTAAGCGAGTGCCTGGTGGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTgcgc                                                               >  1:1057599/1‑71 (MQ=255)
                                                                                                                                   gTAAGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAgcg                 >  2:752232/1‑114 (MQ=255)
                                                                                                                                      |                                                                                                                               
ATCTTGGTATTAACCCCCCGAGCCTCTACGCGGCTTTTGGCAGTAAAGCTGGGTTATTTAGCCGTGTACTCAATGAATACGTCGGTACGGAAGCTATTCCGCTTGCCGATATTCTTCGTGATGATCGTCCGGTAGGCGAGTGCCTGGTTGAGGTATT‑‑AAAAGAAGCGGCGCGCAGATATAGCCAAAACGGCGGCTGCGCTGGCTGTATGGTTCTTGAAGGTATTCATAGTCATGATCCACAAGCGCGTGATATTGCCGTT  >  NC_000913/4474257‑4474516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A