Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I2 R1
|
762 |
35.5 |
1545288 |
95.5% |
1475750 |
117.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,153,502 |
A→G |
intergenic (+51/‑142) |
sibA → / → sibB |
sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,153,502 | 0 | A | G | 100.0%
| 143.6
/ NA
| 41 | intergenic (+51/‑142) | sibA/sibB | sRNA antisense regulator of toxic IbsA protein/sRNA antisense regulator of toxic IbsB protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (25/16); total (25/16) |
AATCACTAAGAGTATCACCAGTATGATGACGTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAATGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCAGGATCGCAGACTACAAAGCCTGCGGATTGACAATCTTATCGTGAAGG > NC_000913/2153367‑2153630
|
aaTCACTAAGAGTATCACCAGTATGATGACGTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGc < 2:478229/139‑1 (MQ=255)
aaTCACTAAGAGTATCACCAGTATGATGACGTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGc > 2:475397/1‑139 (MQ=255)
agagTATCACCAGTATGATGACGTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATc > 1:2978/1‑139 (MQ=255)
aTCACCAGTATGATGACGTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTaa > 1:709726/1‑139 (MQ=255)
tCACCAGTATGATGACGTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAAc > 2:3845/1‑139 (MQ=255)
aCCAGTATGATGACGTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAAcgc < 2:709726/139‑1 (MQ=255)
gTATGATGACGTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGa > 1:606840/1‑139 (MQ=255)
gTATGATGACGTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGa > 2:102865/1‑139 (MQ=255)
tgatgaCGTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATa < 1:391232/139‑1 (MQ=255)
gTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGt > 1:271244/1‑139 (MQ=255)
tGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGtt > 1:309029/1‑139 (MQ=255)
tGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGtt > 1:532955/1‑139 (MQ=255)
tGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGtt < 2:2978/139‑1 (MQ=255)
cTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTc > 2:372132/1‑139 (MQ=255)
atcatAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTAAATAAAATAGTTTccctg > 2:276569/1‑136 (MQ=255)
aaCCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGat < 1:681388/139‑1 (MQ=255)
cccTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGatta > 2:29358/1‑139 (MQ=255)
tCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCg > 1:381472/1‑139 (MQ=255)
ccTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGt > 1:748928/1‑139 (MQ=255)
gCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCa < 2:532955/139‑1 (MQ=255)
tcttctCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGaa < 2:645133/95‑1 (MQ=255)
tcttctCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGaa > 1:645133/1‑95 (MQ=255)
cttctCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGaa > 2:437328/1‑139 (MQ=255)
agGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCa < 1:102330/139‑1 (MQ=255)
ggCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTcc < 2:110272/94‑1 (MQ=255)
ggCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTcc > 1:110272/1‑94 (MQ=255)
gCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGatta > 2:415068/1‑103 (MQ=255)
gCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGatta < 1:415068/103‑1 (MQ=255)
gCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCAgg > 1:526790/1‑139 (MQ=255)
cTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCAGGa < 1:29358/139‑1 (MQ=255)
ccGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCAGGATCGCa < 2:526790/139‑1 (MQ=255)
tCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCtg > 2:600896/1‑80 (MQ=255)
tCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCtg < 1:600896/80‑1 (MQ=255)
cGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGtt > 2:746491/1‑70 (MQ=255)
cGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGtt < 1:746491/70‑1 (MQ=255)
tcatcGGCTTACCACCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCAGGATCGCAGACTACAAAGCCTGCGGATTGa < 2:124902/139‑1 (MQ=255)
atcGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCAGGATCGCAGACTACAAAGCCTGCGGATTGACa > 1:98345/1‑139 (MQ=255)
cGGCTTACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCAGGATCGCAGACTACAAAGCCTGCGGATTGACAAt > 2:650954/1‑139 (MQ=255)
tACCTCCTTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCAGGATCGCAGACTACAAAGCCTGCGGATTGACAATCTTAt > 1:447571/1‑139 (MQ=255)
tcctTTCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCAGGATCGCAGACTACAAAGCCTGCGGATTGACAATCTTATCGTg < 1:626545/139‑1 (MQ=255)
ttCGCCCTGAGTGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCAGGATCGCAGACTACAAAGCCTGCGGATTGACAATCTTATCGTGAAgg > 2:42669/1‑139 (MQ=255)
|
AATCACTAAGAGTATCACCAGTATGATGACGTGCTTCATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCATCGGCTTACCTCCTTTCGCCCTGAATGCAGTCTATCGCTAACGCGTGAATAAAATAGTTTCCTCTGTGATTATTGCGTAACGACTCGCAAAGAATATTTGCTGGCAGGATCGCAGACTACAAAGCCTGCGGATTGACAATCTTATCGTGAAGG > NC_000913/2153367‑2153630
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
