Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F1 I2 R1 757 38.1 1607544 96.5% 1551279 117.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,340,525 C→T P95S (CCG→TCG)  yciS → DUF1049 family inner membrane protein, function unknown

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,340,5250CT100.0% 57.4 / NA 19P95S (CCG→TCG) yciSDUF1049 family inner membrane protein, function unknown
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (11/8);  total (11/8)

TGCTGCGGGGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCAGAAGTGCGCAACAAAACAAGCAAGATGAAGCCAAC  >  NC_000913/1340389‑1340656
                                                                                                                                        |                                                                                                                                   
tgctgcGGGGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCg                                                                                                                                   >  2:420569/1‑139 (MQ=255)
              cTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAgcggc                                                                                                                     <  2:83770/139‑1 (MQ=255)
                     ttggttgATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGaa                                                                                                              <  1:413614/139‑1 (MQ=255)
                          tgATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACt                                                                                                         <  2:468732/139‑1 (MQ=255)
                             tttGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAg                                                                                                                 >  1:393942/1‑128 (MQ=255)
                             tttGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAg                                                                                                                 <  2:393942/128‑1 (MQ=255)
                                                                        cgcTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTGGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGcc                                                           >  1:12756/1‑139 (MQ=255)
                                                                        cgcTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGcc                                                           >  2:99185/1‑139 (MQ=255)
                                                                                     aTAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAgttg                                                                                         <  1:592939/96‑1 (MQ=255)
                                                                                     aTAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAgttg                                                                                         >  2:592939/1‑96 (MQ=255)
                                                                                     aTAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGtata                                              <  1:161419/139‑1 (MQ=255)
                                                                                       aaaGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATg                                            <  1:99185/139‑1 (MQ=255)
                                                                                       aaaGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATg                                            >  2:667808/1‑139 (MQ=255)
                                                                                         aGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATggg                                          >  1:437153/1‑139 (MQ=255)
                                                                                            gACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCg                                                                >  2:326240/1‑114 (MQ=255)
                                                                                            gACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCg                                                                <  1:326240/114‑1 (MQ=255)
                                                                                                            ttCACCCGCGACTGACGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCAGAAGTGCGcaacaa                       >  2:291703/1‑139 (MQ=255)
                                                                                                                           cGTGGCTGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCAGAAGTGCGCAACAAAACAAGCAAGATGaa        >  2:794205/1‑139 (MQ=255)
                                                                                                                                 tGTAGTGTCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCAGAAGTGCGCAACAAAACAAGCAAGATGAAGCCAAc  >  2:711057/1‑139 (MQ=255)
                                                                                                                                        |                                                                                                                                   
TGCTGCGGGGTTTGCTATCGGTTGGTTGATTTGTGGCCTGTTCTGGCTGCGAGTTCGTGTTTCCCTGGCGCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAGCGGCGAAGGAATAACTTTCTATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCAGAAGTGCGCAACAAAACAAGCAAGATGAAGCCAAC  >  NC_000913/1340389‑1340656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A