Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
773 |
79.9 |
4112934 |
92.2% |
3792125 |
104.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
1,265,001 |
1086 bp→GAGG |
|
[prfA] |
[prfA] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
1265001 |
1266086 |
1086 |
62 [0] |
[0] 56 |
[prfA] |
[prfA] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 1265000 | 0 (0.000) | 55 (0.700)
+GAGG |
38/198 |
0.7 |
100% |
intergenic (+30/‑12) |
hemA/prfA |
glutamyl tRNA reductase/peptide chain release factor RF‑1 |
| ? | NC_000913 |
1266087 = |
0 (0.000) | coding (1076/1083 nt) |
prfA |
peptide chain release factor RF‑1 |
GATK/CNVnator alignment
N/A
