Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	773	79.9	4112934	92.2%	3792125	104.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,350,162	A→G	L284L (TTG→CTG)	glpQ ←	periplasmic glycerophosphodiester phosphodiesterase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,350,162	0	A	G	100.0%	349.1 / NA	96	L284L (TTG→CTG)	glpQ	periplasmic glycerophosphodiester phosphodiesterase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (51/45); total (51/45)

Only 100 of 102 total aligned reads displayed.

ATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGT  >  NC_000913/2350028‑2350293

aTTCACATCAGGAGTGTATTCAGGCAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCata                                                                                                                                 >  1:1493186/1‑139 (MQ=255)

        cAGGAGTGTATTCAGGCAGTTTATCTGACCGCACGGTATAAGGATGCATTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATc                                                                                                                         <  1:1538133/139‑1 (MQ=255)

              tgtATTCAGGCAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGAcc                                                                                                                   >  2:888118/1‑139 (MQ=255)

                tATTCAGGCAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCg                                                                                                                       >  1:1574265/1‑133 (MQ=255)

                tATTCAGGCAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCg                                                                                                                       <  2:1574265/133‑1 (MQ=255)

                tATTCAGGCAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCaa                                                                                                                 >  2:1712862/1‑139 (MQ=255)

                tATTCAGGCAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCaa                                                                                                                 >  2:1545298/1‑139 (MQ=255)

                  ttCAGGCAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAAt                                                                                                                >  1:1128660/1‑139 (MQ=255)

                      ggCAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCAt                                                                                                           <  2:1493186/139‑1 (MQ=255)

                      ggCAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCAt                                                                                                           <  1:1465900/139‑1 (MQ=255)

                        cAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATc                                                                                                                         >  2:1125006/1‑123 (MQ=255)

                        cAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATc                                                                                                                         <  1:1125006/123‑1 (MQ=255)

                          gTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGc                                                                                                       >  1:1592009/1‑139 (MQ=255)

                          gTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGc                                                                                                       >  1:520206/1‑139 (MQ=255)

                                   aCCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATATTTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCg                                                                                               <  2:1128660/139‑1 (MQ=255)

                                    ccGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGcc                                                                                             <  2:1576700/139‑1 (MQ=255)

                                      gCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCAc                                                                                           <  2:1592009/139‑1 (MQ=255)

                                                     gCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAcc                                                                            <  2:520206/139‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAGTCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAccc                                                                           >  1:1474186/1‑139 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCa                                                                                                                                   >  1:15640/1‑83 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATgg                                                                                                                              <  1:961122/88‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATc                                                                                                                         >  2:172763/1‑93 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATc                                                                                                                         <  1:172763/93‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGAc                                                                                                                    <  1:203102/98‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGAc                                                                                                                    >  2:203102/1‑98 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATAcc                                                                                                             <  2:1797229/105‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATAcc                                                                                                             >  1:1797229/1‑105 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCa                                                                                                            >  2:1715047/1‑106 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCa                                                                                                            <  1:1715047/106‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCAt                                                                                                           <  1:1110061/107‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCAt                                                                                                           >  2:1110061/1‑107 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTcc                                                                                                >  1:1735517/1‑118 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTcc                                                                                                <  2:1735517/118‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAccc                                                                           >  1:1953849/1‑139 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAccc                                                                           >  1:214773/1‑139 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAccc                                                                           >  2:736972/1‑139 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAccc                                                                           >  2:1326962/1‑139 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAccc                                                                           >  1:1531799/1‑139 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAc                                                                             <  2:1809361/137‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAc                                                                             <  2:870282/137‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAc                                                                             >  2:1695065/1‑137 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAc                                                                             <  1:1179661/137‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAc                                                                             >  2:1179661/1‑137 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAc                                                                             <  1:1695065/137‑1 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAc                                                                             >  1:870282/1‑137 (MQ=255)

                                                      cACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAc                                                                             >  1:1809361/1‑137 (MQ=255)

                                                        cTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCgg                                                                         <  1:888118/139‑1 (MQ=255)

                                                            cAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTa                                                                     >  2:59663/1‑139 (MQ=255)

                                                                ttATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACa                                                                 <  2:214773/139‑1 (MQ=255)

                                                                 tATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATc                                                                                                                         >  1:1114587/1‑82 (MQ=255)

                                                                 tATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATc                                                                                                                         <  2:1114587/82‑1 (MQ=255)

                                                                 tATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACAt                                                                <  1:1712862/139‑1 (MQ=255)

                                                                   ttCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATcc                                                              <  2:1531799/139‑1 (MQ=255)

                                                                         tgAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGt                                                        >  1:1757246/1‑139 (MQ=255)

                                                                           aGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCaa                                                                                                                 <  2:1766595/80‑1 (MQ=255)

                                                                           aGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCaa                                                                                                                 >  1:1766595/1‑80 (MQ=255)

                                                                           aGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCAt                                                                                                           >  2:778783/1‑86 (MQ=255)

                                                                           aGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCAt                                                                                                           <  1:778783/86‑1 (MQ=255)

                                                                           aGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAg                                                      <  2:1757246/139‑1 (MQ=255)

                                                                            gCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGt                                                     >  1:634330/1‑139 (MQ=255)

                                                                                  tGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCg                                                         >  2:1130514/1‑129 (MQ=255)

                                                                                  tGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCg                                                         <  1:1130514/129‑1 (MQ=255)

                                                                                    cACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTa                                             <  1:59663/139‑1 (MQ=255)

                                                                                     aCCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATc                                                                                                                         >  2:1073035/1‑62 (MQ=255)

                                                                                     aCCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATc                                                                                                                         <  1:1073035/62‑1 (MQ=255)

                                                                                      ccATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGC‑‑ATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAAccc                                         <  2:369022/139‑1 (MQ=255)

                                                                                        aTGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAAccc                                         >  2:82431/1‑139 (MQ=255)

                                                                                         tGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAc                                                                             <  1:1700890/102‑1 (MQ=255)

                                                                                         tGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAc                                                                             >  2:1700890/1‑102 (MQ=255)

                                                                                          gCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAAt                                                                                                                <  2:206171/66‑1 (MQ=255)

                                                                                          gCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAAt                                                                                                                >  1:206171/1‑66 (MQ=255)

                                                                                          gCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGc                                                                                              >  1:1163448/1‑84 (MQ=255)

                                                                                          gCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGc                                                                                              <  2:1163448/84‑1 (MQ=255)

                                                                                          gCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAg                                       >  1:24007/1‑139 (MQ=255)

                                                                                                   tttGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCTGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATcc                              >  2:550477/1‑139 (MQ=255)

                                                                                                   tttGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACa                                                                 >  1:217728/1‑104 (MQ=255)

                                                                                                   tttGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACa                                                                 <  2:217728/104‑1 (MQ=255)

                                                                                                     tGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCgg                            >  2:1621694/1‑139 (MQ=255)

                                                                                                      gATA‑TTACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGc                           <  2:24007/139‑1 (MQ=255)

                                                                                                            tACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTa                                                                     <  2:1657000/92‑1 (MQ=255)

                                                                                                            tACCCGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTa                                                                     >  1:1657000/1‑92 (MQ=255)

                                                                                                              cccGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCg                                                                                               <  1:38109/64‑1 (MQ=255)

                                                                                                              cccGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCg                                                                                               >  2:38109/1‑64 (MQ=255)

                                                                                                              cccGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCg                                                         >  1:1174700/1‑102 (MQ=255)

                                                                                                              cccGGCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCg                                                         <  2:1174700/102‑1 (MQ=255)

                                                                                                                 ggCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTctgct                 <  2:634330/139‑1 (MQ=255)

                                                                                                                  gCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCg                             <  2:1295775/126‑1 (MQ=255)

                                                                                                                  gCTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCg                             >  1:1295775/1‑126 (MQ=255)

                                                                                                                   cTGCGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAcc                                                                            <  2:1325988/78‑1 (MQ=255)

                                                                                                                   cTGAGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCAcc                                                                            >  1:1325988/1‑78 (MQ=255)

                                                                                                                      cGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCTCCAc                                                                                           <  1:1196979/60‑1 (MQ=255)

                                                                                                                      cGATGTCTCCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCAc                                                                                           >  2:1196979/1‑60 (MQ=255)

                                                                                                                           tctcCTCAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTTGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCAtt       >  1:884952/1‑139 (MQ=255)

                                                                                                                               ctcAATCAGCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAg   <  1:82431/139‑1 (MQ=255)

                                                                                                                                tcaatcagCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTaa                                                <  2:338198/93‑1 (MQ=255)

                                                                                                                                tcaatcagCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTaa                                                >  1:338198/1‑93 (MQ=255)

                                                                                                                                tcaatcagCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGt  >  1:1612583/1‑139 (MQ=255)

                                                                                                                                tcaatcagCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGt  <  1:736972/139‑1 (MQ=255)

                                                                                                                                  aatcagCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTctgct                 >  2:68660/1‑122 (MQ=255)

                                                                                                                                  aatcagCATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTctgct                 <  1:68660/122‑1 (MQ=255)

ATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGACCGCACGGTATAAGGATGCACTACCAGTTTATTCTGCTGAGCATCTTGCACCATGCCAGTGAGTTTGATA‑TTACCCGGCTGCGATGTCTCCTCAATCAACATATGGTAATCCGGACCAATACCATCTGCATATTCCGCCACCTGTTTCATGGCACCCGGCTTAAACATCCAGTCGTAGTTGTAATTAACCCAGCTTCCATCCGGCTGTTTCTGCTGCGTTTCATTCCAGT  >  NC_000913/2350028‑2350293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A