Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
502 |
34.8 |
1912488 |
98.2% |
1878063 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,353,378 |
C→G |
A225P (GCG→CCG) |
yhcC ← |
radical SAM family oxidoreductase YhcC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,353,378 | 0 | C | G | 100.0%
| 145.1
/ NA
| 40 | A225P (GCG→CCG) | yhcC | radical SAM family oxidoreductase YhcC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (20/20); total (20/20) |
GCGAATCATTTCTCCGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGCCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCGGTTTCAACCACTCGCT > NC_000913/3353301‑3353449
|
gCGAATCATTTCTCCGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCa > 1:626957/1‑80 (MQ=255)
cGAATCATTTCTCCGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCAt > 2:626940/1‑80 (MQ=255)
gAATCATTTCTCCGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATaa > 1:626985/1‑81 (MQ=255)
aaTCATTTCTCCGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAAt < 2:626916/81‑1 (MQ=255)
aTCATTTCTCCGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAAtg < 2:626917/81‑1 (MQ=255)
tctcCGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGcc < 1:626918/80‑1 (MQ=255)
ccGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCttt > 1:626973/1‑80 (MQ=255)
ccGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCttt > 1:626967/1‑80 (MQ=255)
cGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTca > 1:626964/1‑81 (MQ=255)
cGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTc < 1:626919/80‑1 (MQ=255)
aggCAGTGAGCGTGTAATACACCAGTTCAATACCGTTCAAACGCCACGCTTCCCAGGCTTTCGGCATAATGCTGCCttt < 1:626921/78‑1 (MQ=255)
gCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTcaca < 2:626920/81‑1 (MQ=255)
aGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAat < 2:626922/81‑1 (MQ=255)
gTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAata < 2:626923/81‑1 (MQ=255)
aGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATg > 1:626971/1‑80 (MQ=255)
aGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATg < 1:626924/80‑1 (MQ=255)
gCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATg > 2:626974/1‑79 (MQ=255)
cGTGTAATCCTCCAGTTCGATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAg < 2:626925/81‑1 (MQ=255)
gtgtAATCCTCCAGTTCAATACCGTTCAAACACCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGc < 2:626926/81‑1 (MQ=255)
gtAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCg > 1:626970/1‑80 (MQ=255)
aTCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATGTGCAGCGGATg < 1:626927/81‑1 (MQ=255)
ctccAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAg > 2:626979/1‑81 (MQ=255)
cAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCtt < 1:626928/81‑1 (MQ=255)
cAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCtt > 2:626980/1‑81 (MQ=255)
aaTACCGTTCAGACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGGTGCAGCTTTATGcc < 1:626929/81‑1 (MQ=255)
aCCGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTc > 1:626978/1‑81 (MQ=255)
ccGTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTc < 1:626930/80‑1 (MQ=255)
gTTCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCAc < 2:626931/81‑1 (MQ=255)
tCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGc > 2:626968/1‑81 (MQ=255)
tCAAACGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGc > 2:626976/1‑81 (MQ=255)
aaaCGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCg > 1:626996/1‑81 (MQ=255)
aaCGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCgg > 2:626982/1‑81 (MQ=255)
cGCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCGGtt < 2:626932/81‑1 (MQ=255)
gCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCGGttt > 1:626989/1‑81 (MQ=255)
gCCCCGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCGGttt > 1:626988/1‑81 (MQ=255)
cccGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCGGTTTc > 2:626987/1‑80 (MQ=255)
ccGCTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCGGTTTCaa < 2:626933/81‑1 (MQ=255)
cTTCCCAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCGGTTTCAACCa < 2:626934/81‑1 (MQ=255)
cAGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCGGTTTCAACCACTCGc < 2:626935/81‑1 (MQ=255)
aGGCTTTCGGCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCGGTTTCAACCACTCGCt > 2:626990/1‑81 (MQ=255)
|
GCGAATCATTTCTCCGGCAGTGAGCGTGTAATCCTCCAGTTCAATACCGTTCAAACGCCCCGCTTCCCAGGCTTTCGCCATAATGCTGCCTTTCACAATATGCAGCGGATGCAGCTTTATGCCGTCCACGCCGGTTTCAACCACTCGCT > NC_000913/3353301‑3353449
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
