Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,569,344 |
(T)6→5 |
intergenic (‑16/+2) |
glgC ← / ← glgX |
glucose‑1‑phosphate adenylyltransferase/limit dextrin alpha‑1,6‑glucohydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,569,339 | 0 | T | . | 100.0%
| 107.8
/ NA
| 26 | intergenic (‑11/+7) | glgC/glgX | glucose‑1‑phosphate adenylyltransferase/limit dextrin alpha‑1,6‑glucohydrolase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (12/14); total (12/14) |
TCAGGGCAACAGATTTCAATGGCAGCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCTTTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGACAGCCGTAATCACTGGGTTAT > NC_000913/3569259‑3569410
|
tCAGGGCAACAGATTTCAATGGCAGCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCt < 2:621636/81‑1 (MQ=255)
cAGGGCAACAGATTTCAATGGCAGCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCtt > 1:621686/1‑81 (MQ=255)
aGGGCAACAGATTTCAATGGCAGCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCttt < 2:621638/81‑1 (MQ=255)
aGGGCAACAGATTTCAATGGCAGCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCttt < 1:621640/81‑1 (MQ=255)
cAACAGATTTCAATGGCAGCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCtttttat > 1:621691/1‑79 (MQ=255)
aCAGATTTCAATGGCAGCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCtttttatca < 1:621641/81‑5 (MQ=255)
cAATGGCAGCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTgg > 2:621681/1‑80 (MQ=255)
gCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAacacata > 2:621697/1‑78 (MQ=255)
gcgcgcCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAAt < 1:621642/80‑1 (MQ=255)
gcgcCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCg < 1:621643/81‑1 (MQ=255)
gcgcCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCg < 1:621644/81‑1 (MQ=255)
gcCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCgtg > 2:621698/1‑81 (MQ=255)
cATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAg > 2:621701/1‑81 (MQ=255)
cATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAg < 2:621644/81‑1 (MQ=255)
ttAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGt < 1:621646/81‑1 (MQ=255)
aaGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTcc > 1:621696/1‑81 (MQ=255)
gATCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGc > 1:621688/1‑81 (MQ=255)
aTCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGc < 2:621646/80‑1 (MQ=255)
tCGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGc > 2:621696/1‑79 (MQ=255)
cGTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGc > 1:621706/1‑78 (MQ=255)
gTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAg < 2:621648/80‑1 (MQ=255)
gTTCTTCTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGa < 1:621648/81‑1 (MQ=255)
ttcttcTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGAc < 2:621649/81‑1 (MQ=255)
ttcttcTCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGAc < 1:621651/81‑1 (MQ=255)
ttctCTAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGACAGc > 1:621692/1‑81 (MQ=255)
ctAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGACAGCCGt > 1:621695/1‑80 (MQ=255)
tAAACTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGACAGCCg < 2:621651/78‑1 (MQ=255)
aCTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAGTCCGTGTGCAGGTCCCTGCCAGACAGCCGTAATCa < 1:621653/81‑1 (MQ=255)
cTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGACAGCCGTAATCAc > 1:621690/1‑81 (MQ=255)
cTAACCATGACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGACAGCCGTAATCAc < 1:621654/81‑1 (MQ=255)
gACTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGACAGCCGTAATCACTGGGTTAt > 2:621703/1‑81 (MQ=255)
aCTAACTCC‑TTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGACAGCCGTAATCACTGGGTTAt < 2:621654/80‑1 (MQ=255)
|
TCAGGGCAACAGATTTCAATGGCAGCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCTTTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGACAGCCGTAATCACTGGGTTAT > NC_000913/3569259‑3569410
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
