Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,531,085 |
(A)5→4 |
pseudogene (500/1054 nt) |
yncI → |
putative transposase YncI |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,531,081 | 0 | A | . | 100.0%
| 79.2
/ NA
| 18 | pseudogene (496/1054 nt) | yncI | putative transposase YncI |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (8/10); total (8/10) |
TGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATT > NC_000913/1531004‑1531156
|
tGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGaaaa > 1:269214/1‑81 (MQ=255)
aGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGa > 1:269211/1‑80 (MQ=255)
gTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGATaa < 1:269199/81‑1 (MQ=255)
ggAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGAt > 1:269209/1‑81 (MQ=255)
gAAGCCAAAAGTAATGAGATTACAGGCATTCCAGAGTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGATg < 2:269200/81‑1 (MQ=255)
aaGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGATGc < 2:269201/81‑1 (MQ=255)
aGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGATGCt < 1:269202/81‑1 (MQ=255)
gagaTTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAg > 2:269219/1‑80 (MQ=255)
ttACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAGa > 2:269210/1‑77 (MQ=255)
aGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATc < 2:269203/81‑1 (MQ=255)
cAGAGTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCg > 2:269215/1‑79 (MQ=255)
cAGAGTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGa < 1:269204/80‑1 (MQ=255)
agagTTGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAg < 2:269205/81‑1 (MQ=255)
ttGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATc > 1:269217/1‑80 (MQ=255)
tGCTTAACCTACTGTATTTAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCa > 2:269218/1‑80 (MQ=255)
cTGTATTTAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATaaaaa < 1:269207/79‑1 (MQ=255)
cTGTATTTAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAg < 1:269206/81‑1 (MQ=255)
gTATTTAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAg > 1:269216/1‑79 (MQ=255)
tAAAG‑AAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGAtt < 2:269208/80‑1 (MQ=255)
|
TGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATT > NC_000913/1531004‑1531156
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
