Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,625,496 |
A→G |
F629L (TTT→CTT) |
dcp ← |
peptidyl‑dipeptidase Dcp |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,625,496 | 0 | A | G | 100.0%
| 76.6
/ NA
| 22 | F629L (TTT→CTT) | dcp | peptidyl‑dipeptidase Dcp |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (11/11); total (11/11) |
GCTGTTACCTCTGGAAAGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAACCACTGATAACCATCATCGGCCAACATTTGCGTCCACAGATAAGCGTAATAACCTGCAGCATATCCGCCACC > NC_000913/1625422‑1625568
|
gCTGTTACCTCTGGAAAGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTg < 2:283269/81‑1 (MQ=255)
gCTGTTACCTCTGGAAAGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTg < 2:283267/81‑1 (MQ=255)
gCTGTTACCTCTGGAAAGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTg < 1:283268/81‑1 (MQ=255)
gTTACCTCTGGAAAGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGAt > 2:283288/1‑80 (MQ=255)
tctGGAAAGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACcat > 1:283287/1‑80 (MQ=255)
ctGGAAAGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACcatca > 2:283294/1‑81 (MQ=255)
ctGGAAAGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACcatca > 1:283291/1‑81 (MQ=255)
aaaGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACCATCATCgg > 1:283300/1‑81 (MQ=255)
aGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGcc < 1:283271/81‑1 (MQ=255)
aGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGcc < 1:283270/81‑1 (MQ=255)
cGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGCCAACAt > 2:283289/1‑81 (MQ=255)
gCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGCCAACAtt > 1:283297/1‑81 (MQ=255)
aaaaCGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGCCAACATTTGCGTCca < 1:283272/81‑1 (MQ=255)
aaaCGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGCCAACATTTGCGTCca > 2:283290/1‑80 (MQ=255)
aaaCGCAGCCCATTTTCACGCGTCAATCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGCCAACATTTGCGTCca > 2:283292/1‑80 (MQ=255)
ccATTTTCACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGCCAACATTTGCGTCCACAGATAAGCg > 1:283293/1‑81 (MQ=255)
cACGCGTTAATCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGCCAACATTTGCGTCCACAGATAAGCGtaataa < 1:283273/80‑1 (MQ=255)
ttAATCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGCCAACATTTGCGTCCACAGATAAGCGTAATAACCTgcag < 2:283274/81‑1 (MQ=255)
aaTCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGCCAACATTTGCGTCCACAGATAAGCGTAATAACCTgcagca > 2:283285/1‑81 (MQ=255)
aTCCGCCCTGCTCAACAAGCCACTGATAACCATCATCGGCCAACATTTGCGTCCACAGATAAGCGTAATAACCTgcagca < 2:283275/80‑1 (MQ=255)
cTCAACAAGCCACTGATAACCATCATCGGCCAACATTTGCGTCCACAGATAAGCGTAATAACCTGCAGCATATCCGccacc < 1:283276/81‑1 (MQ=255)
cTCAACAAGCCACTGATAACCATCATCGGCCAACATTTGCGTCCACAGATAAGCGTAATAACCTGCAGCATATCCGccac < 1:283277/80‑1 (MQ=255)
|
GCTGTTACCTCTGGAAAGGATCGCCTCGCGAAAACGCAGCCCATTTTCACGCGTTAATCCGCCCTGCTCAACAAACCACTGATAACCATCATCGGCCAACATTTGCGTCCACAGATAAGCGTAATAACCTGCAGCATATCCGCCACC > NC_000913/1625422‑1625568
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
