Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,907,906 |
C→T |
intergenic (‑315/+355) |
yobF ← / ← yebO |
DUF2527 domain‑containing protein YobF/uncharacterized protein YebO |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,907,906 | 0 | C | T | 100.0%
| 23.3
/ NA
| 8 | intergenic (‑315/+355) | yobF/yebO | DUF2527 domain‑containing protein YobF/uncharacterized protein YebO |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (1/7); total (1/7) |
AGTTATTACATAGTGCGTGCAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAAT > NC_000913/1907843‑1907981
|
aGTTATTACATAGTGCGTGCAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCATTTTTTCTCATAAAAcag < 2:325750/81‑1 (MQ=255)
tgcgtgcAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCATTTTTTCTCATAAAACAGTCAGTTAACGGCt < 1:325751/81‑1 (MQ=255)
gtgcAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCATTTTTTCTCATAAAACAGTCAGTTAACGGCTat > 1:325766/1‑80 (MQ=255)
tgcAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCATTTTTTCTCATAAAACAGTCAGTTAACGGCTatta < 2:325752/81‑1 (MQ=255)
tGAATAAAAAGTTATATCATTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCa < 1:325753/81‑1 (MQ=255)
tAAAAAGTTATATCATTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAgg < 1:325754/81‑1 (MQ=255)
gTTATATCATTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGt < 1:325755/81‑1 (MQ=255)
tatCATTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAAt < 2:325756/81‑1 (MQ=255)
|
AGTTATTACATAGTGCGTGCAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAAT > NC_000913/1907843‑1907981
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
