Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,048,790 |
G→A |
G1285S (GGT→AGT) |
yeeJ → |
inverse autotransporter adhesin |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,048,790 | 0 | G | A | 100.0%
| 109.9
/ NA
| 32 | G1285S (GGT→AGT) | yeeJ | inverse autotransporter adhesin |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (19/13); total (19/13) |
ATCGCCGGTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAA > NC_000913/2048712‑2048864
|
aTCGCCGGTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAgt > 2:348760/1‑81 (MQ=255)
tCGCCGGTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAgtg < 2:348740/81‑1 (MQ=255)
gCCGGTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAgtgt > 1:348777/1‑80 (MQ=255)
gCCGGTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAgtgt > 1:348773/1‑80 (MQ=255)
ggTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACt < 1:348741/81‑1 (MQ=255)
gTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACtg > 2:348804/1‑81 (MQ=255)
cccGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGaa > 2:348792/1‑81 (MQ=255)
cGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACt > 1:348794/1‑81 (MQ=255)
aGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCa > 1:348783/1‑81 (MQ=255)
aGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCa > 1:348788/1‑81 (MQ=255)
aaCAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCAcc < 2:348742/81‑1 (MQ=255)
aaCAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTCTCCGGTGAAAAGTGTGACTGTGAACTTCAc > 2:348795/1‑80 (MQ=255)
aGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAg > 1:348782/1‑80 (MQ=255)
aGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAg > 1:348774/1‑80 (MQ=255)
ggCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCa < 2:348743/81‑1 (MQ=255)
gCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAg < 2:348744/81‑1 (MQ=255)
cAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGc < 2:348745/81‑1 (MQ=255)
gCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGa < 2:348746/81‑1 (MQ=255)
caCCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCg > 1:348789/1‑80 (MQ=255)
acaGTCGTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGAc > 1:348786/1‑80 (MQ=255)
gTTGATAATAATGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGAAGAGACAGCCGAAATAACGAAcggc < 2:348747/81‑1 (MQ=255)
ttGATAATAATGGCTTTCCGGCGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAAcggcg < 1:348748/81‑1 (MQ=255)
taataaTGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCa < 2:348749/81‑1 (MQ=255)
taatGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGc < 1:348750/81‑1 (MQ=255)
aatGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGTGACAGCCGAAATGACGAACGGCGGTCAAGcc > 2:348805/1‑81 (MQ=255)
atGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCg > 1:348755/1‑81 (MQ=255)
tGGCTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCTGTCAAGCCGt > 2:348800/1‑81 (MQ=255)
cTTTCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGac < 2:348751/81‑1 (MQ=255)
tCCGGTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGacgaa > 1:348801/1‑81 (MQ=255)
ggTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGacgaacg > 2:348802/1‑80 (MQ=255)
ggTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGacgaacg > 2:348803/1‑80 (MQ=255)
gTGAAAAGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGAcgaacgaa < 2:348752/81‑1 (MQ=255)
|
ATCGCCGGTACCCCGCAGAACAGCTCCGGCAGCGTCATCACCGCCACAGTCGTTGATAATAATGGCTTTCCGGTGAAAGGTGTGACTGTGAACTTCACCAGCAACGCAGCGACAGCCGAAATGACGAACGGCGGTCAAGCCGTGACGAACGAA > NC_000913/2048712‑2048864
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
