Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,053,669 |
T→C |
R9R (CGT→CGC) |
shiA → |
shikimate:H(+) symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,053,669 | 0 | T | C | 100.0%
| 128.7
/ NA
| 36 | R9R (CGT→CGC) | shiA | shikimate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (18/18); total (18/18) |
TACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGTGCCGTCGT > NC_000913/2053596‑2053740
|
tACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGAt > 2:349553/1‑80 (MQ=255)
aCCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATg > 1:349548/1‑80 (MQ=255)
aCCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATg > 1:349554/1‑80 (MQ=255)
ccTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATg > 1:349538/1‑79 (MQ=255)
ccTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGa < 2:349501/80‑1 (MQ=255)
ttCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAggg < 2:349503/80‑1 (MQ=255)
ttCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAgg < 2:349502/79‑1 (MQ=255)
cATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGc < 2:599810/81‑1 (MQ=255)
aaaaaGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTc > 1:349549/1‑81 (MQ=255)
aaaaGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTcg < 2:349504/81‑1 (MQ=255)
aaaaGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTc < 1:349505/80‑1 (MQ=255)
aGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCgcgc > 2:349551/1‑81 (MQ=255)
aGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCgcgc < 2:349506/81‑1 (MQ=255)
aGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCcga > 2:349557/1‑81 (MQ=255)
aGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCcga > 2:349542/1‑81 (MQ=255)
tACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCcgacg < 2:349507/81‑1 (MQ=255)
cAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAg > 1:349546/1‑81 (MQ=255)
aaaCAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGc > 1:349550/1‑81 (MQ=255)
aCAGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTg > 1:349555/1‑81 (MQ=255)
aGGATCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCg > 2:349558/1‑81 (MQ=255)
aTCATTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTa < 2:349508/81‑1 (MQ=255)
aTTATGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGc < 2:349509/81‑1 (MQ=255)
aTGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGc > 2:349568/1‑81 (MQ=255)
tGGACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCt > 2:349559/1‑81 (MQ=255)
gACTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTc > 2:349552/1‑81 (MQ=255)
aCTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCg < 2:349510/81‑1 (MQ=255)
cTCCACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGc > 2:349561/1‑81 (MQ=255)
cACGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTg < 2:349511/80‑1 (MQ=255)
aCGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGt > 1:349566/1‑81 (MQ=255)
aCGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGt < 2:349513/81‑1 (MQ=255)
aCGCTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGt < 2:349512/81‑1 (MQ=255)
cTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGTGcc < 2:349516/81‑1 (MQ=255)
cTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGTGcc < 2:349515/81‑1 (MQ=255)
cTCATCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGTGcc < 2:349514/81‑1 (MQ=255)
aTCTCCACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGTGCcgtc > 1:349562/1‑81 (MQ=255)
cACTCGCCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGTGCcgtcgt < 2:349517/78‑1 (MQ=255)
|
TACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGTGCCGTCGT > NC_000913/2053596‑2053740
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
