Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,055,073 |
G→A |
G5S (GGC→AGC) |
amn → |
AMP nucleosidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,055,073 | 0 | G | A | 100.0%
| 69.5
/ NA
| 20 | G5S (GGC→AGC) | amn | AMP nucleosidase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (9/11); total (9/11) |
TTGTTTCACATTTCTGTGACATACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGGGCTCCGGTCTGACCCCAGCTCAGGCACTGGATAAACTCGACGCGCTGTATGAGCAATCTGTAGTCGCATTACGC > NC_000913/2054998‑2055147
|
ttGTTTCACATTTCTGTGACATACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCt < 2:374299/79‑1 (MQ=255)
tGTTTCACATTTCTGTGACATACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCTcc < 1:374300/80‑1 (MQ=255)
gTTTCACATTTCTGTGACATACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCTCCgg > 2:374322/1‑81 (MQ=255)
gTTTCACATTTCTGTGACATACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCTCCg < 1:374301/80‑1 (MQ=255)
tttCACATTTCTGTGACATACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCTCCGGt > 1:374324/1‑81 (MQ=255)
cTGTGACATACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCTCCGGTCTGACCCCa < 2:374302/80‑1 (MQ=255)
tgACATACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCTCCGGTCTGACCCCAGCt < 1:494799/80‑1 (MQ=255)
tgACATACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCTCCGGTCTGACCCCAGCTc < 1:374303/81‑1 (MQ=255)
aTACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCTCCGGTCTGACCCCAGCTCAGGc < 2:374304/81‑1 (MQ=255)
tACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCTCCGGTCTGACCCCAGCTCAGGCa > 2:374328/1‑81 (MQ=255)
cGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCTCCGGTCTGACCCCAGCTCAGGCACTGGa > 1:374323/1‑80 (MQ=255)
ggTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGTTTCGGTCTGACCCCAGCTCAGGCACTGGATAAACTCGAc > 2:374333/1‑81 (MQ=255)
ggTAATTGTATGGAACAGGAGACACACATGAATAATAAGAGCTCCGGTCTGACCCCAGCTCAGGCACTGGATAAACTCGAc < 1:374305/81‑1 (MQ=255)
aTTGTATGGAACAGGAGACACACATGAATAATAAGAGCTCCGGTCTGACCCCAGCTCAGGCACTGGATAAACTCGACgcgc > 1:374326/1‑81 (MQ=255)
gaCACACATGAATAATAAGAGCTCCGGTCTGACCCCAGCTCAGGCACTGGATAAACTCGACGCGCTGTATGAGCAATCTGt < 1:374306/81‑1 (MQ=255)
cacacaTGAATAATAAGAGCTCCGGTCTGACCCCAGCTCAGGCACTGGATAAACTCGACGCGCTGTATGAGCAATCTGTAg > 2:374330/1‑81 (MQ=255)
acaTGAATAATAAGAGCTCCGGTCTGACCCCAGCTCAGGCACTGGATAAACTCGACGCGCTGTATGAGCAATCTGTAGTCg > 2:374334/1‑81 (MQ=255)
gAATAATAAGAGCTCCGGTCTGACCCCAGCTCAGGCACTGGATAAACTCGACGCGCTGTATGAGCAATCTGTAGTCGCAt > 1:374325/1‑80 (MQ=255)
ataataAGAGCTCCGGTCTGACCCCAGCTCAGGCACTGGATAAACTCGACGCGCTGTATGAGCAATCTGTAGTCGCATTAc < 1:374307/81‑1 (MQ=255)
ataaGAGCTCCGGTCTGACCCCAGCTCAGGCACTAGATAAACTCGACGCGCTGTATGAGCAATCTGTAGTCGCATTACGc < 2:374308/80‑1 (MQ=255)
|
TTGTTTCACATTTCTGTGACATACTATCGGATGTGCGGTAATTGTATGGAACAGGAGACACACATGAATAATAAGGGCTCCGGTCTGACCCCAGCTCAGGCACTGGATAAACTCGACGCGCTGTATGAGCAATCTGTAGTCGCATTACGC > NC_000913/2054998‑2055147
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
