Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,062,199 |
(A)7→8 |
intergenic (‑266/‑61) |
nac ← / → asnV |
DNA‑binding transcriptional dual regulator Nac/tRNA‑Asn |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,062,192 | 1 | . | A | 100.0%
| 46.4
/ NA
| 15 | intergenic (‑259/‑68) | nac/asnV | DNA‑binding transcriptional dual regulator Nac/tRNA‑Asn |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (8/7); total (8/7) |
GGAGGGTATGCACCACGATGGTTCATTACCCAATAAGATTGAAAGCTCACCACTTTGTTGAAATTGACAGCAAACAAAC‑AAAAAAATGCATTTCACCCTTTGACATCACCATGCACTGCCATTAATATGCGCCCCGTTCACACGATTCCTCTG > NC_000913/2062114‑2062266
|
ggaggGTATGCACCACGATGGTTCATTACCCAATAAGATTGAACGCTCACCACTTTGTTGAAATTGACAGcaaacaaac‑a > 2:350644/1‑80 (MQ=255)
aggGTATGCACCACGATGGTTCATTACCCAATAAGATTGAAAGCTCACCACTTTGTTGAAATTGACAGCAAACAAAC‑aaaa < 1:350624/81‑1 (MQ=255)
tATGCACCACGATGGTTCATTACCCAATAAGATTGAAAGCTCACCACTTTGTTGAAATTGACAGCAAACAAAC‑aaaaaaaa < 2:350625/81‑2 (MQ=255)
tGCACCACGATGGTTCATTACCCAATAAGATTGAAAGCTCACCACTTTGTTGAAATTGACAGCAAACAAAC‑aaaaaaaatg > 2:350651/1‑78 (MQ=255)
acGATGGTTCATTACCCAATAAGATTGAAAGCTCACCACTTTGTTGAAATTGACAGCAAACAAACAAAAAAAATGCATTTc < 1:350626/81‑1 (MQ=255)
gATGGTTCATTACCCAATAAGATTGAAAGCTCACCACTTTGTTGAAATTGACAGCAAACAAACAAAAAAAATGTATTTCAc < 1:350627/81‑1 (MQ=255)
aTTACCCAATAAGATTGAAAGGTCACCATTTTGTAGAAATTGACAGCGAACAAACAAAAAAAATGCAAAGCACCCTTTGAc < 2:350628/81‑1 (MQ=255)
aaTAAGATTGAAAGCTCACCACTTTGTTGAAATTGACAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCa > 2:700131/1‑81 (MQ=255)
aTTGAAAGCTCACCACTTTGTTGAAATTGACAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCATGCACt < 2:350629/81‑1 (MQ=255)
ttGAAAGCTCACCACTTTGTTGAAATTGACAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCATGCACTg > 1:350650/1‑81 (MQ=255)
aaGCTCACCACTTTGTTGAAATTGACAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCATGCACTGCCAt > 2:350648/1‑81 (MQ=255)
accacTTTGTTGAAATTGACAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCATGCACTGCCATTAatat < 1:350630/81‑1 (MQ=255)
accacTTTGTTGAAATTGACAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCATGCACTGCCATTAatat > 2:350653/1‑81 (MQ=255)
ccacTTTGTTGAAATTGACAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCATGCACTGCCATTAATATg > 1:350649/1‑81 (MQ=255)
cacTTTGTTGAAATTGACAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCATGCACTGCCATTAATATgc < 1:350631/81‑1 (MQ=255)
gttgAAATTGACAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCATGCACTGCCATTAATATGCGcccc < 1:350632/80‑1 (MQ=255)
aaTTGACAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCATGCACTGCCATTAATATGCGCCCCGTTca > 2:350652/1‑80 (MQ=255)
aCAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCATGCACTGCCATTAATATGCGCCCCGTTCACACGAt > 1:350654/1‑81 (MQ=255)
cAGCAAACAAACAAAAAAAATGCATTTCACCCTTTGACATCACCATGCATTGCCATTAATATGCGCCCCGTTCACACGAtt > 2:350655/1‑81 (MQ=39)
caaacaaaAAAAATGCATTTCACCCTTTGACATCACCATGCACTGCCATTAATATGCGCCCCGTTCACACGATTCCTCTg > 1:350656/1‑80 (MQ=255)
|
GGAGGGTATGCACCACGATGGTTCATTACCCAATAAGATTGAAAGCTCACCACTTTGTTGAAATTGACAGCAAACAAAC‑AAAAAAATGCATTTCACCCTTTGACATCACCATGCACTGCCATTAATATGCGCCCCGTTCACACGATTCCTCTG > NC_000913/2062114‑2062266
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
