Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,634,630 |
(A)6→7 |
coding (399/1371 nt) |
xseA → |
exodeoxyribonuclease VII subunit XseA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,634,624 | 1 | . | A | 100.0%
| 106.2
/ NA
| 31 | Y131* (TAC→TAA) | xseA | exodeoxyribonuclease VII subunit XseA |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (15/16); total (15/16) |
GCCGGTGAAGGGCTGCTGCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATAC‑AAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACATGAT > NC_000913/2634544‑2634696
|
gccggTGAAGGGCTGCTGCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATAc < 2:450842/81‑1 (MQ=255)
gTGAAGGGCTGCTGCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATAC‑aaa > 1:450923/1‑80 (MQ=255)
gAAGGGCTGCTGCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATAC‑aaaaa > 2:450876/1‑80 (MQ=255)
ctgctgCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACt > 2:450894/1‑81 (MQ=255)
cAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTtccct < 1:450843/80‑1 (MQ=255)
gAAGTACGAACAGCTCAAAGCGTAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTg > 1:450874/1‑81 (MQ=255)
aaGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTgc < 2:450844/81‑1 (MQ=255)
cGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCAtt > 1:450875/1‑81 (MQ=255)
cAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGt < 2:450845/81‑1 (MQ=255)
gCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTg < 2:450846/81‑1 (MQ=255)
gCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTg > 1:450882/1‑81 (MQ=255)
cAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGgtg > 1:450892/1‑81 (MQ=255)
aaGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGtgtg < 1:450847/81‑1 (MQ=255)
gAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCa < 2:450848/81‑1 (MQ=255)
aaGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCAc > 2:450883/1‑81 (MQ=255)
aaGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCAc > 2:450878/1‑81 (MQ=255)
ttGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTc < 2:450849/81‑1 (MQ=255)
cAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCaaa < 1:450850/81‑1 (MQ=255)
gCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAAc < 2:450851/81‑1 (MQ=255)
cTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAAcc > 2:450898/1‑81 (MQ=255)
tGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCg > 1:450863/1‑81 (MQ=255)
ttGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGtgctgc > 2:450888/1‑81 (MQ=255)
tGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGtgctgc < 2:450852/80‑1 (MQ=255)
tGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTtcg > 2:450889/1‑81 (MQ=255)
tGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTgcg > 2:450879/1‑81 (MQ=255)
gTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTgcgc > 1:450887/1‑81 (MQ=255)
cGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTa > 2:450891/1‑80 (MQ=255)
gATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTAc < 1:450854/80‑1 (MQ=255)
gATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTAc < 2:450853/80‑1 (MQ=255)
gATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTAc < 1:450855/80‑1 (MQ=255)
tCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACAt > 1:450890/1‑80 (MQ=255)
tCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACATg < 2:450856/81‑1 (MQ=255)
aGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACATGat < 2:450858/81‑1 (MQ=255)
aGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACATGat < 2:450857/81‑1 (MQ=255)
|
GCCGGTGAAGGGCTGCTGCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATAC‑AAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACATGAT > NC_000913/2634544‑2634696
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
