Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,634,630 |
(A)6→7 |
coding (399/1371 nt) |
xseA → |
exodeoxyribonuclease VII subunit XseA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,634,624 | 1 | . | A | 100.0%
| 97.8
/ NA
| 27 | Y131* (TAC→TAA) | xseA | exodeoxyribonuclease VII subunit XseA |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (11/16); total (11/16) |
CCGGTGAAGGGCTGCTGCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATAC‑AAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACATGATATT > NC_000913/2634545‑2634699
|
ccggTGAAGGGCTGCTGCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATAC‑a < 1:482250/81‑1 (MQ=255)
cggTGAAGGGCTGCTGCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATAC‑a > 1:482288/1‑80 (MQ=255)
tGAAGGGCTGCTGCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATAC‑aaaa > 2:482290/1‑80 (MQ=255)
gggCTGCTGCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATAC‑aaaaaaacc < 1:482251/81‑4 (MQ=255)
ctgcAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTtcc < 1:482253/81‑1 (MQ=255)
ctgcAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTtc < 2:482252/80‑1 (MQ=255)
ctgcAACAGAAGTACGAACAGCTCAAAGCAAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACtt < 2:858525/79‑1 (MQ=255)
tgcAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTtccc > 2:482289/1‑81 (MQ=255)
aGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCt > 2:482285/1‑81 (MQ=255)
aaGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTgc < 1:482254/81‑1 (MQ=255)
gAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTg > 1:482287/1‑81 (MQ=255)
aGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGtt < 2:482255/81‑1 (MQ=255)
aaaGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGgtgt < 1:482256/81‑1 (MQ=255)
gCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGAt < 2:482257/81‑1 (MQ=255)
gCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGAt < 1:482258/81‑1 (MQ=255)
cGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATc < 2:482259/81‑1 (MQ=255)
aaGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCAc > 1:482304/1‑81 (MQ=255)
aaGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCAc < 1:482260/81‑1 (MQ=255)
gTTGCAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCt > 2:482295/1‑81 (MQ=255)
cAGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCaaa < 1:482261/81‑1 (MQ=255)
aGGCTGAAGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCaaa > 2:482298/1‑80 (MQ=255)
aaGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGt > 2:482303/1‑81 (MQ=255)
aGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGtg > 1:482306/1‑81 (MQ=255)
aGGTTTGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGtg < 2:482262/81‑1 (MQ=255)
tGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGtgctgc < 2:482263/80‑1 (MQ=255)
tGTTCGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTgcg > 2:482297/1‑81 (MQ=255)
cGATCAGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTa > 1:482296/1‑80 (MQ=255)
aGCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACATGa < 1:482264/80‑1 (MQ=255)
gCAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACATGata > 2:482308/1‑81 (MQ=255)
cAATACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACATGatat < 1:482265/81‑1 (MQ=255)
aaTACAAAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACATGATAtt < 1:482266/81‑1 (MQ=255)
|
CCGGTGAAGGGCTGCTGCAACAGAAGTACGAACAGCTCAAAGCGAAGTTGCAGGCTGAAGGTTTGTTCGATCAGCAATAC‑AAAAAACCACTTCCCTCCCCTGCGCATTGCGTTGGTGTGATCACCTCAAAAACCGGTGCTGCGCTACATGATATT > NC_000913/2634545‑2634699
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
