Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,751,434 |
T→C |
S202P (TCT→CCT) |
nadK → |
NAD kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,751,434 | 0 | T | C | 100.0%
| 101.8
/ NA
| 29 | S202P (TCT→CCT) | nadK | NAD kinase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (18/11); total (18/11) |
ATGGACTAATTATTTCGACGCCAACAGGCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCTCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATAAACAGCAGCAGC > NC_000913/2751360‑2751511
|
aTGGACTAATTATTTCGACGCCAACAGGCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCccct < 2:473511/77‑1 (MQ=255)
aTGGACTAATTATTTCGACGCCAACAGGCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTg > 2:473565/1‑80 (MQ=255)
ttattTCGACGCCAACAGGCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTa < 1:473512/81‑1 (MQ=255)
tttCGACGCCAACAGGCTCCACCGCCTATTACCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTAccc < 1:473513/81‑1 (MQ=255)
tCGACGCCAACAGGCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTg > 1:473559/1‑81 (MQ=255)
cGACGCCAACAGGCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTgg > 2:473562/1‑81 (MQ=255)
gACGCCAACAGGCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGt > 1:473552/1‑81 (MQ=255)
aCGCCAACAGGCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTg < 2:473514/81‑1 (MQ=255)
gCCAACAGGCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGcc > 2:473563/1‑81 (MQ=255)
aGGCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGtt > 1:473570/1‑81 (MQ=255)
ggCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTc < 1:473515/81‑1 (MQ=255)
ggCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTc < 1:473516/81‑1 (MQ=255)
gCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTcc > 2:473579/1‑81 (MQ=255)
aCCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCa > 2:473576/1‑80 (MQ=255)
aCCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCa > 2:473560/1‑80 (MQ=255)
cTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGtt < 2:473517/81‑1 (MQ=255)
cccTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCa < 2:473518/80‑1 (MQ=255)
ccTCTCTGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAg < 2:473519/80‑1 (MQ=255)
tctGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGa > 2:473554/1‑81 (MQ=255)
tGCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGAc > 1:473564/1‑80 (MQ=255)
gCAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCa > 2:473558/1‑81 (MQ=255)
cAGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGAc < 2:473520/78‑1 (MQ=255)
aGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACt > 1:473569/1‑81 (MQ=255)
aGGCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTCTCAGCACGACCACt > 2:473557/1‑81 (MQ=255)
ggCGGTCCTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACTg > 1:473561/1‑81 (MQ=255)
cTATTCTGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATa > 1:473574/1‑80 (MQ=255)
tGACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATAAAcag > 2:473583/1‑79 (MQ=255)
gACCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATAAAcagcag > 2:473580/1‑81 (MQ=255)
aCCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATAAAcagcag < 1:473522/80‑1 (MQ=255)
aCCCCCCCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATAAAcagc < 1:473521/78‑1 (MQ=255)
ccccccTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATAAAcagcagcag < 2:473523/81‑1 (MQ=255)
ccccccTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATAAAcagcagcag > 1:473575/1‑81 (MQ=255)
ccccCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATAAACagcagcagc < 2:473524/81‑1 (MQ=255)
|
ATGGACTAATTATTTCGACGCCAACAGGCTCCACCGCCTATTCCCTCTCTGCAGGCGGTCCTATTCTGACCCCCTCTCTGGATGCGATTACCCTGGTGCCCATGTTCCCGCATACGTTGTCAGCACGACCACTGGTCATAAACAGCAGCAGC > NC_000913/2751360‑2751511
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
