Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,831,270 |
G→A |
F340F (TTC→TTT) |
norR ← |
DNA‑binding transcriptional dual regulator NorR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,831,270 | 0 | G | A | 100.0%
| 100.4
/ NA
| 29 | F340F (TTC→TTT) | norR | DNA‑binding transcriptional dual regulator NorR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (20/9); total (20/9) |
AATGACATCATCGCCCCGCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGGAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACG > NC_000913/2831192‑2831347
|
aaTGACATCATCGCCCCGCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGaaa < 1:487166/81‑1 (MQ=255)
aTGACATCATCGCCCCGCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAAt < 2:487167/81‑1 (MQ=255)
tGACATCATCGCCCCGCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATc < 1:487169/81‑1 (MQ=255)
tGACATCATCGCCCCGCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATc < 2:487168/81‑1 (MQ=255)
atcGCCCCGCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGc < 1:487170/81‑1 (MQ=255)
cGCCCCGCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGc > 1:487207/1‑79 (MQ=255)
cGCCCCGCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGc > 2:487224/1‑79 (MQ=255)
ccGCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCAc < 2:487171/81‑1 (MQ=255)
ccGCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCAc > 1:487204/1‑81 (MQ=255)
gCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACct < 1:487172/81‑1 (MQ=255)
cAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTcgcg > 1:487209/1‑81 (MQ=255)
cAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTcgcg > 2:487215/1‑81 (MQ=255)
aGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTcgcg > 2:487208/1‑80 (MQ=255)
ggcggcACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTaaa > 1:487250/1‑81 (MQ=255)
cACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATcgcg > 2:487218/1‑81 (MQ=255)
cACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATcgcg > 2:487216/1‑81 (MQ=255)
aCCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCgg > 1:487213/1‑81 (MQ=255)
gAAACACGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTcgccg > 1:487243/1‑81 (MQ=255)
acGCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGc < 2:487173/81‑1 (MQ=255)
gCTCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCAc < 2:487174/81‑1 (MQ=255)
tCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCAcgc > 1:487230/1‑81 (MQ=255)
tCAGGCGATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCAcgc > 2:487221/1‑81 (MQ=255)
gATGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACAt > 2:487217/1‑81 (MQ=255)
aTGAAACAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATc > 2:487212/1‑81 (MQ=255)
cAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCg > 1:487234/1‑81 (MQ=255)
cAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCg > 1:487211/1‑81 (MQ=255)
cAAATCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCg > 2:487229/1‑81 (MQ=255)
aaTCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCa < 2:487175/81‑1 (MQ=255)
aTCGGCGCGAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCa > 2:487222/1‑80 (MQ=255)
gcgAAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACg > 1:487236/1‑81 (MQ=255)
|
AATGACATCATCGCCCCGCTCACGCAGCGGCGGCACCGAAAGTGGAAACACGCTCAGGCGATGAAACAAATCGGCGCGGAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACG > NC_000913/2831192‑2831347
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
