Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,919,365 |
C→T |
T7T (ACG→ACA) |
gudD ← |
D‑glucarate dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,919,365 | 0 | C | T | 100.0%
| 107.5
/ NA
| 31 | T7T (ACG→ACA) | gudD | D‑glucarate dehydratase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (14/17); total (14/17) |
CGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCA > NC_000913/2919289‑2919439
|
cGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTCCATTTCAGTAACAACAGGtgtc < 2:504204/80‑1 (MQ=255)
gtgtGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGtgtcgt < 2:504205/81‑1 (MQ=255)
gtgtGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGtgtcg > 2:504258/1‑80 (MQ=255)
tgtgCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTa < 2:504206/81‑1 (MQ=255)
tgCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTaa < 1:504207/80‑1 (MQ=255)
accacTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTg < 1:504208/81‑1 (MQ=255)
ccacTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTga < 2:504209/81‑1 (MQ=255)
tCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAAc > 2:504248/1‑81 (MQ=255)
aGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAAc < 1:504210/79‑1 (MQ=255)
aGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACt < 2:504211/80‑1 (MQ=255)
aGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACt < 1:504212/80‑1 (MQ=255)
caGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTAt > 1:504251/1‑81 (MQ=255)
cATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTc > 2:504259/1‑81 (MQ=255)
cATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTc > 1:504237/1‑81 (MQ=255)
aCTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCtt > 1:504254/1‑81 (MQ=255)
cTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCttt > 2:504255/1‑81 (MQ=255)
tCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCtttt < 2:504214/79‑1 (MQ=255)
tCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCtttt < 2:504213/79‑1 (MQ=255)
aTGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAg < 2:504215/81‑1 (MQ=255)
ccGCCACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATc > 1:504252/1‑80 (MQ=255)
cACCGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGa < 1:504216/81‑1 (MQ=255)
cGGGATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACgg < 2:504217/81‑1 (MQ=255)
gggATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGc < 1:504219/81‑1 (MQ=255)
gggATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGc < 1:504218/81‑1 (MQ=255)
gATAACCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGcc > 2:504256/1‑80 (MQ=255)
aaCCTGCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGaa > 1:504264/1‑80 (MQ=255)
gCATTTCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACgg > 1:504276/1‑80 (MQ=255)
aTTTCAGTAACAACAGGTATCGTAAATTGGGAATTCATATTTACGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGAc < 1:863198/81‑1 (MQ=255)
tCAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGtt > 1:504263/1‑81 (MQ=255)
cAGTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGtt > 1:504253/1‑80 (MQ=255)
gTAACAACAGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTAc > 1:504274/1‑81 (MQ=255)
acaacaGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAACCAATGACGGCCGAAAACGGGACGTTTACGGt > 2:504257/1‑81 (MQ=255)
caacaGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTc < 2:504220/81‑1 (MQ=255)
aacaGGTGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCa < 2:504221/81‑1 (MQ=255)
|
CGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCA > NC_000913/2919289‑2919439
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
