Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,094,960 |
T→C |
T41A (ACG→GCG) |
yggR ← |
Type II/IV secretion system family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,094,960 | 0 | T | C | 100.0%
| 122.8
/ NA
| 34 | T41A (ACG→GCG) | yggR | Type II/IV secretion system family protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (13/21); total (13/21) |
AGCTGACCATTCTCCAGCAATATTGCCCGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGTATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGGCGCTGCACAGGTGTAGATCCGAG > NC_000913/3094884‑3095036
|
aGCTGACCATTCTCCAGCAATATTGCCCGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCa < 1:538057/81‑1 (MQ=255)
aCCATTCTCCAGCAATATTGCCCGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACg < 1:538058/80‑1 (MQ=255)
ccATTCTCCAGCAATATTGCCCGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGgc < 1:538060/81‑1 (MQ=255)
ccATTCTCCAGCAATATTGCCCGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGgc < 2:538059/81‑1 (MQ=255)
cAGCAATATTGCCCGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCt < 2:538061/79‑1 (MQ=255)
cAGCAATATTGCCCGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTc < 2:538062/81‑1 (MQ=255)
atTGCCCGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTg > 2:538112/1‑81 (MQ=255)
ttGCCCGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGc > 2:538128/1‑81 (MQ=255)
cccGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCcg < 2:538063/80‑1 (MQ=255)
ccGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCcgcg < 2:538064/81‑1 (MQ=255)
gCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGaa > 2:538127/1‑81 (MQ=255)
aTCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATgc < 1:538065/80‑1 (MQ=255)
gTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCa > 1:538113/1‑81 (MQ=255)
gTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCa > 1:538117/1‑81 (MQ=255)
tCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCAt < 1:538066/81‑1 (MQ=255)
tCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCAt < 1:538067/81‑1 (MQ=255)
ccAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTg > 2:538119/1‑81 (MQ=255)
gCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCgg < 2:538068/81‑1 (MQ=255)
aCTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGc > 2:538121/1‑80 (MQ=255)
cTCCCGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCa < 2:538069/81‑1 (MQ=255)
cccGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAgg > 1:538111/1‑81 (MQ=255)
ccGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGgc < 1:538070/81‑1 (MQ=255)
ccGCAGTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGgc > 1:538133/1‑81 (MQ=255)
gTAGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGGCGCTg > 1:538131/1‑80 (MQ=255)
aGCTCTTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAAGCGCTGca > 1:538130/1‑80 (MQ=255)
ctctTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGGCGCTGCACAg < 1:538071/81‑1 (MQ=255)
ctTCGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGGCGCTGCACAGgt > 1:538135/1‑81 (MQ=255)
cGACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGGCGCTGCACAGgtgt < 2:538072/80‑1 (MQ=255)
gACGTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGGCGCTGCACAGGTGTAg < 1:538073/81‑1 (MQ=255)
gTCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGGCGCTGCACAGGTGTAGATc < 1:538074/81‑1 (MQ=255)
tCCGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGGCGCTGCACAGGTGTAGATcc < 1:538075/81‑1 (MQ=255)
cGGCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGGCGCTGCACAGGTGTAGATCCg < 1:538076/80‑1 (MQ=255)
ggCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGGCGCTGCACAGGTGTAGATCCgag < 2:538077/81‑1 (MQ=255)
ggCGCATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGAGCCATCGTGCGGGCCAGGCGCTGCACAGGTGTAGATcc > 1:538124/1‑78 (MQ=255)
|
AGCTGACCATTCTCCAGCAATATTGCCCGCTGATCGTCATCCAGCCACTCCCGCAGTAGCTCTTCGACGTCCGGCGTATCAAACGGCGCAGCTTCCATTCTGCCGCGAATGCGCCATCGTGCGGGCCAGGCGCTGCACAGGTGTAGATCCGAG > NC_000913/3094884‑3095036
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
