Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,149,148 |
T→C |
K108K (AAA→AAG) |
yqhA ← |
uncharacterized protein YqhA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,149,148 | 0 | T | C | 100.0%
| 95.9
/ NA
| 28 | K108K (AAA→AAG) | yqhA | uncharacterized protein YqhA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (20/8); total (20/8) |
GTTATCCGGGACATTTTTCGCATCCATAAAGACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACTTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGTTCTCGGAGATATCCAGCTGT > NC_000913/3149070‑3149223
|
gTTATCCGGGACATTTTTCGCATCCATAAAGACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACctt > 1:549089/1‑81 (MQ=255)
tATCCGGGACATTTTTCGCATCCATAAAGACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGt > 1:549104/1‑81 (MQ=255)
ccGGGACATTTTTCGCATCCATAAAGACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGtttt > 2:549107/1‑81 (MQ=255)
ccGGGACATTTTTCGCATCCATAAAGACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGtttt > 1:549094/1‑81 (MQ=255)
gggACATTTTTCGCATCCATAAAGACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGttttt > 1:549096/1‑80 (MQ=255)
aCATTTTTCGCATCCATAAAGACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGc < 2:549072/81‑1 (MQ=255)
tttttCGCATCCATAAAGACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGAc < 2:549073/81‑1 (MQ=255)
gCATCCATAAAGACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCg > 2:549087/1‑81 (MQ=255)
aaaGACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCAtttt > 2:549109/1‑81 (MQ=255)
gACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTccc > 1:549112/1‑81 (MQ=255)
aCGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTcccc < 2:549074/81‑1 (MQ=255)
aCGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTccc > 1:549100/1‑80 (MQ=255)
cgcAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCccagc > 1:549103/1‑81 (MQ=255)
tAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGtt > 1:549084/1‑81 (MQ=255)
aaGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGtt > 1:549116/1‑80 (MQ=255)
gAATGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCt > 1:549122/1‑81 (MQ=255)
aaTGGAAGAAATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCt < 2:549075/80‑1 (MQ=255)
gaagaaATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTctct < 2:549076/81‑1 (MQ=255)
agaaATTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCttt < 1:549077/81‑1 (MQ=255)
aaaTTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGt > 2:549121/1‑81 (MQ=255)
aTTGCCACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGTtc < 2:549078/81‑1 (MQ=255)
ccACAATCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGTTCTCg > 2:549105/1‑80 (MQ=255)
tCGACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGTTCTCGGAGatat > 2:549117/1‑81 (MQ=255)
gACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGTTCTCGGAGATATc > 1:549126/1‑80 (MQ=255)
gACGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGTTCTCGGAGATATc > 2:549111/1‑80 (MQ=255)
aCGCTGCTACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGTTCTCGGAGATATc > 2:549115/1‑79 (MQ=255)
ctgctACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGTTCTCGGAGATATCCAGCt < 1:549079/81‑1 (MQ=255)
tgctACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGTTCTCGGAGATATCCAGCtg > 1:549110/1‑81 (MQ=255)
gctACCTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGTTCTCGGAGATATCCAGCtgt > 2:549133/1‑81 (MQ=255)
|
GTTATCCGGGACATTTTTCGCATCCATAAAGACGCGCAGTAAGTGAATGGAAGAAATTGCCACAATCGACGCTGCTACTTTGTTTTTCAGCGACGTTGCGTCCATTTTCCCCAGCCAGTTCAGCTTCTCTTTGTTCTCGGAGATATCCAGCTGT > NC_000913/3149070‑3149223
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
