Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,418,852 |
G→A |
intergenic (+241/‑190) |
yhdV → / → yhdW |
lipoprotein YhdV/putative ABC transporter periplasmic binding protein YhdW |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,418,852 | 0 | G | A | 100.0%
| 69.3
/ NA
| 21 | intergenic (+241/‑190) | yhdV/yhdW | lipoprotein YhdV/putative ABC transporter periplasmic binding protein YhdW |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (10/11); total (10/11) |
AGAAATATACTCACGCTAACAATCATTATTCTGCTTAGTAAAACACGCGTAAATATTTTGCGCCAAAATGTGGCGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCTGTCTACACTCAGCTTATTGCGACGC > NC_000913/3418780‑3418927
|
aGAAATATACTCACGCTAACAATCATTATTCTGCTTAGTAAAACACGCGTAAATATTTTGCGCCAAATTGTGACGAATGtt < 2:603177/81‑1 (MQ=255)
cGCTAACAATCATTATTCTGCTTAGTAAAACACGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCAcc < 2:603178/81‑1 (MQ=255)
aCAATCATTATTCTGCTTAGTAAAACACGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTg < 1:603179/80‑1 (MQ=255)
aTCATTATTCTGCTTAGTAAAACACGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCggg < 1:603180/81‑1 (MQ=255)
attCTGCTTAGTAAAACACGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCt < 1:603181/80‑1 (MQ=255)
attCTGCTTAGTAAAACACGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTg > 1:603219/1‑81 (MQ=255)
tCTGCTTAGTAAAACACGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGtt > 1:603204/1‑81 (MQ=255)
cTGCTTAGTAAAACACGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGttt > 2:603203/1‑81 (MQ=255)
gCTTAGTAAAACACGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGtttt > 1:603211/1‑80 (MQ=255)
ttAGTAAAACACGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTttat > 1:603220/1‑81 (MQ=255)
gTAAAACACGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTttatta < 1:603182/80‑1 (MQ=255)
acacGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCt < 1:603183/81‑1 (MQ=255)
acGCGTAAATATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCTGt > 1:603218/1‑81 (MQ=255)
aaaTATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCTGTCTacac > 1:603205/1‑81 (MQ=255)
aaTATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCTGTCTACACt < 1:603184/81‑1 (MQ=255)
aaTATTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCTGTCTACACt > 2:603206/1‑81 (MQ=255)
atatTTTGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCTGTCTACACt > 2:603208/1‑80 (MQ=255)
tGCGCCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCTGTCTACACTCAGCtt < 1:603185/80‑1 (MQ=255)
gcgcCAAAATGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCTGTCTACACTCAGCTTAt > 2:603213/1‑81 (MQ=255)
aaTGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCTGTCTACACTCAGCTTATTGCGAcg < 1:603186/81‑1 (MQ=255)
aTGTGACGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCTGTCTACACTCAGCTTATTGCGAcgc < 1:603187/81‑1 (MQ=255)
|
AGAAATATACTCACGCTAACAATCATTATTCTGCTTAGTAAAACACGCGTAAATATTTTGCGCCAAAATGTGGCGCATGTTTCATTTTCGCACCATTGCGGGGCGCTGTTTTTATTATTTCCTGTCTACACTCAGCTTATTGCGACGC > NC_000913/3418780‑3418927
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
