Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,512,195 |
C→T |
L50L (TTG→TTA) |
yhfZ ← |
putative DNA‑binding transcriptional regulator YhfZ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,512,195 | 0 | C | T | 100.0%
| 75.1
/ NA
| 22 | L50L (TTG→TTA) | yhfZ | putative DNA‑binding transcriptional regulator YhfZ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (7/15); total (7/15) |
TCCATCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACC > NC_000913/3512121‑3512269
|
tCCATCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAAcgc < 1:622178/80‑1 (MQ=255)
gACCAGATAACTGCCATTGCGCCCACGGCGATCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCg < 2:622179/80‑1 (MQ=255)
aCCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGt > 2:622217/1‑80 (MQ=255)
aCCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGt > 1:622214/1‑80 (MQ=255)
gATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGc < 1:622180/81‑1 (MQ=255)
aTAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGc > 1:622195/1‑80 (MQ=255)
cATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATg < 2:622181/81‑1 (MQ=255)
ttGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGaa > 2:622215/1‑81 (MQ=255)
gcgcCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAAc < 2:622182/80‑1 (MQ=255)
gcgcCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAAc < 1:622183/80‑1 (MQ=255)
gcCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGc < 1:622184/81‑1 (MQ=255)
aaTCCGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAg > 1:622216/1‑81 (MQ=255)
cGTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTc < 1:622185/80‑1 (MQ=255)
gTATCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCAt < 2:622186/81‑1 (MQ=255)
tCGCTCCGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCt < 2:622187/80‑1 (MQ=255)
ccGCTTGATTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGtt > 2:622220/1‑81 (MQ=255)
aTTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAAt < 1:622189/80‑1 (MQ=255)
aTTCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAAt < 2:622188/80‑1 (MQ=255)
ttCCAGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTCTCAATCg < 2:622190/81‑1 (MQ=255)
aGCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTa > 2:622222/1‑81 (MQ=255)
gCGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTAc < 1:622191/81‑1 (MQ=255)
cGTTTTTAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTAcc < 1:622192/81‑1 (MQ=255)
|
TCCATCTCGACCAGATAACTGCCATTGCGCCCACGGCGTTCAATCCGTATCGCTCCGCTTGATTCCAGCGTTTTCAACGCGGCCTGCGTCAGGCCAACGGATGAACGGCATTCATTTGCCAGCTCATCTATGGTTTTCAATCGATTACC > NC_000913/3512121‑3512269
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
