Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,602,830 |
C→T |
G472S (GGT→AGT) |
ftsY ← |
signal recognition particle receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,602,830 | 0 | C | T | 100.0%
| 108.2
/ NA
| 31 | G472S (GGT→AGT) | ftsY | signal recognition particle receptor |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (17/14); total (17/14) |
ATCCTCTCGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTT > NC_000913/3602753‑3602905
|
aTCCTCTCGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAAt < 1:641872/81‑1 (MQ=255)
ccTCTCGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATg > 2:641926/1‑80 (MQ=255)
ctctCGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTa < 1:641873/81‑1 (MQ=255)
ctctCGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTa < 2:641874/81‑1 (MQ=255)
ctcGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGc > 2:641928/1‑81 (MQ=255)
cAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAg < 2:641875/81‑1 (MQ=255)
aaaaaGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAgg < 2:641876/81‑1 (MQ=255)
aaaaGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAgg > 1:641914/1‑80 (MQ=255)
aaaGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGa < 1:641877/81‑1 (MQ=255)
aaaGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGa < 1:641878/81‑1 (MQ=255)
gTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATAc > 2:641930/1‑81 (MQ=255)
aGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAg > 2:641921/1‑81 (MQ=255)
cgtcCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCa > 2:641946/1‑81 (MQ=255)
gtcCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCAc > 2:641945/1‑81 (MQ=255)
gtcCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCAc < 2:641879/81‑1 (MQ=255)
ccTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCgaga < 2:641880/81‑1 (MQ=255)
ccTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCgag > 1:641947/1‑80 (MQ=255)
aaaCGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAAt > 2:641931/1‑81 (MQ=255)
aaaCGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAAt > 2:641934/1‑81 (MQ=255)
aaaCGGACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAAt > 2:641924/1‑81 (MQ=255)
gACGCAAATCCTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTAccc < 2:641881/81‑1 (MQ=255)
ccTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCg > 2:641951/1‑81 (MQ=255)
cTCAATACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCgc > 2:641935/1‑81 (MQ=255)
aaTACGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCgcc < 2:641882/79‑1 (MQ=255)
aCGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCgccgtgcc > 1:641932/1‑81 (MQ=255)
cGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCgccgtgccg > 2:641929/1‑81 (MQ=255)
cGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCgccgtgccg < 2:641883/81‑1 (MQ=255)
cGTTCGCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCgccgtgccg > 2:641933/1‑81 (MQ=255)
gCCGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAg < 2:641884/81‑1 (MQ=255)
cGACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGtt > 1:641918/1‑81 (MQ=255)
gACACTAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGttt < 1:641885/81‑1 (MQ=255)
|
ATCCTCTCGGGCAAAAAGTGCCTCTATAAAGTCGTCCGCCTTAAACGGACGCAAATCCTCAATACGTTCGCCGACACCAATGTAGCGGATAGGGATACCAAACTGGTCAGCCACCGAGAAAATTACCCCGCCTTTCGCCGTGCCGTCCAGTTT > NC_000913/3602753‑3602905
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
