Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,649,690 |
A→T |
A252A (GCA→GCT) |
arsB → |
arsenite/antimonite:H(+) antiporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,649,690 | 0 | A | T | 100.0%
| 49.2
/ NA
| 15 | A252A (GCA→GCT) | arsB | arsenite/antimonite:H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (8/7); total (8/7) |
GGCTGGGTTGTTTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGT > NC_000913/3649613‑3649765
|
ggctggGTTGTTTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTgctgct > 2:651780/1‑81 (MQ=255)
gttgttTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGgc > 2:651777/1‑81 (MQ=255)
tACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTg < 1:651749/80‑1 (MQ=255)
ctgGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTgtc < 2:651750/81‑1 (MQ=255)
gtggGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTgtcgtc < 1:651751/81‑1 (MQ=255)
gtggGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTgtcgtc < 1:651752/81‑1 (MQ=255)
aTTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTaa < 1:651753/81‑1 (MQ=255)
ggAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGc > 1:651792/1‑81 (MQ=255)
gAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGc < 1:651754/80‑1 (MQ=255)
aaCCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGa > 1:651784/1‑81 (MQ=255)
aaCCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGa > 2:651793/1‑81 (MQ=255)
tCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATa > 1:651787/1‑81 (MQ=255)
gAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCt > 1:651796/1‑81 (MQ=255)
aGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTg > 2:651786/1‑81 (MQ=255)
cATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCgg < 1:651755/81‑1 (MQ=255)
aTTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGt > 1:651799/1‑81 (MQ=255)
|
GGCTGGGTTGTTTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGT > NC_000913/3649613‑3649765
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
