Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,649,690 |
A→T |
A252A (GCA→GCT) |
arsB → |
arsenite/antimonite:H(+) antiporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,649,690 | 0 | A | T | 100.0%
| 120.2
/ NA
| 33 | A252A (GCA→GCT) | arsB | arsenite/antimonite:H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (16/17); total (16/17) |
GCTGGGTTGTTTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGC > NC_000913/3649614‑3649767
|
gctggGTTGTTTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGctgctg < 2:704838/81‑1 (MQ=255)
gggTTGTTTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTgg > 2:704871/1‑81 (MQ=255)
gggTTGTTTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTgg > 1:704873/1‑81 (MQ=255)
ttgttTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGgcg > 1:704886/1‑81 (MQ=255)
gttTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGgcgcg > 2:704888/1‑81 (MQ=255)
gttTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGgcgcg > 1:704887/1‑81 (MQ=255)
tGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGatat > 1:704883/1‑81 (MQ=255)
cTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGatat < 1:704839/79‑1 (MQ=255)
ctgctgGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATattatt < 1:704840/80‑1 (MQ=255)
ctgGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGAGCGCGCTGATATTATTTgtc < 2:704841/81‑1 (MQ=255)
gtggGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTgtcgtc > 1:704885/1‑81 (MQ=255)
gtggGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTgtcgtc < 2:704843/81‑1 (MQ=255)
gtggGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTgtcgtc > 2:704878/1‑81 (MQ=255)
gtggGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTgtcgtc < 1:704844/81‑1 (MQ=255)
gtggGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTgtcgt < 2:704842/80‑1 (MQ=255)
ttttCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAAc > 1:704881/1‑81 (MQ=255)
tttCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAAc < 1:704845/80‑1 (MQ=255)
gTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGt > 1:704896/1‑81 (MQ=255)
ccTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCa > 1:704880/1‑81 (MQ=255)
ccTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCa > 2:704895/1‑81 (MQ=255)
cTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCAt < 2:704846/81‑1 (MQ=255)
gAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCg < 2:704847/81‑1 (MQ=255)
gAACCGCTCGGCATTCCGGTGAGCGCCATTGCTGATGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCg < 2:704848/81‑1 (MQ=255)
aCCGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGAt > 2:704899/1‑81 (MQ=255)
ccGCTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGAt > 1:704897/1‑80 (MQ=255)
cTCGGCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAAt < 1:704849/81‑1 (MQ=255)
ggCATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACg < 2:704850/81‑1 (MQ=255)
cATTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACggg < 1:704851/81‑1 (MQ=255)
aTTCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGt < 1:704852/81‑1 (MQ=255)
tCCGGTGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTa > 2:704867/1‑80 (MQ=255)
tGAGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTcc > 1:704898/1‑81 (MQ=255)
aGCGCCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCt < 2:704853/80‑1 (MQ=255)
gcCATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTgcgc < 2:704854/81‑1 (MQ=255)
ccATTGCTGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGcgcg < 1:704855/81‑1 (MQ=255)
tgctgcTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGc > 1:704891/1‑81 (MQ=255)
|
GCTGGGTTGTTTTACTGCTTCTGCTGGTGGGATTTTTCGTCCTGGAACCGCTCGGCATTCCGGTGAGCGCCATTGCAGCTGTGGGCGCGCTGATATTATTTGTCGTCGCTAAACGCGGTCATGCGATTAATACGGGTAAAGTCCTGCGCGGTGC > NC_000913/3649614‑3649767
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
