Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,852,829 |
C→T |
R384H (CGC→CAC) |
ydjE ← |
putative transporter YdjE |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,852,829 | 0 | C | T | 100.0%
| 77.3
/ NA
| 22 | R384H (CGC→CAC) | ydjE | putative transporter YdjE |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (10/12); total (10/12) |
TAATGCCGCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGCGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGTATAAAAAGAAGATCA > NC_000913/1852753‑1852904
|
taatGCCGCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTaa < 1:340003/81‑1 (MQ=255)
taatGCCGCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTaa < 2:340004/81‑1 (MQ=255)
atGCCGCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCGTTAACGAAACCCGAACCGCGCAGGTGTAAAt > 1:340038/1‑81 (MQ=255)
ccGCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCg < 2:758462/81‑1 (MQ=255)
gCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGtt > 2:340029/1‑81 (MQ=255)
aaCGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTgg > 1:340037/1‑81 (MQ=255)
aaCGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTgg < 2:340005/81‑1 (MQ=255)
cGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTGGc > 2:340043/1‑80 (MQ=255)
ccATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTGGCCaa < 2:340006/81‑1 (MQ=255)
tAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTGGCCAAAGc < 2:340007/81‑1 (MQ=255)
tAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTGGCCAAAGc < 2:340008/81‑1 (MQ=255)
aGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTGGCCAAAGCTCCGGGatat < 1:340009/81‑1 (MQ=255)
cTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTGGCCAAAGCTCCGGGATATaaa > 1:340036/1‑81 (MQ=255)
cgacgaTCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTGGCCAAAGCTCCGGGATATAAAccg > 2:340046/1‑81 (MQ=255)
cgACGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAg > 1:340041/1‑80 (MQ=255)
aCGGCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCaa < 2:340010/81‑1 (MQ=255)
ggCATTAACGAAACCCGAACCGCGCAGGTGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAac < 2:340011/81‑1 (MQ=255)
cGAAACCCGAACCGCGCAGGTGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGt < 2:340012/81‑1 (MQ=255)
gAAACCCGAACCGCGCAGGTGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGta > 2:340045/1‑81 (MQ=255)
gAACCGCGCAGGTGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGTATaaa > 1:340039/1‑78 (MQ=255)
cgcgCAGGTGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGTATAAAAagaaga < 1:340013/81‑1 (MQ=255)
gcAGGTGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGTATAAAAAGAAGatca > 2:340035/1‑81 (MQ=255)
|
TAATGCCGCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGCGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGTATAAAAAGAAGATCA > NC_000913/1852753‑1852904
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
