Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,185,882 |
A→T |
intergenic (‑86/‑35) |
rcnR ← / → rcnA |
DNA‑binding transcriptional repressor RcnR/Ni(2(+))/Co(2(+)) exporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,185,882 | 0 | A | T | 100.0%
| 66.4
/ NA
| 19 | intergenic (‑86/‑35) | rcnR/rcnA | DNA‑binding transcriptional repressor RcnR/Ni(2(+))/Co(2(+)) exporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (8/11); total (8/11) |
GTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCT > NC_000913/2185808‑2185956
|
gTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGATTCAGAt < 2:397521/81‑1 (MQ=255)
gTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGATTCAGAt < 2:397522/81‑1 (MQ=255)
aaGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGa < 2:397523/81‑1 (MQ=255)
aGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGaa > 1:397549/1‑81 (MQ=255)
gAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGAAt < 1:397524/81‑1 (MQ=255)
tGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGAATTAATa > 1:397545/1‑81 (MQ=255)
aaaTCATAACACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGAATTAATACt > 2:397541/1‑79 (MQ=255)
aaTCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGAATTAATACTAAg < 2:397525/81‑1 (MQ=255)
aCTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGAATTAATACTAAGAATtattat < 1:397526/81‑1 (MQ=255)
aCTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGAATTAATACTAAGAATtattat > 1:397550/1‑81 (MQ=255)
aaTCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGAATTAATACTAAGAATTATTATCATGa < 1:397527/80‑1 (MQ=255)
ggggggTAGTATCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTa > 2:397548/1‑81 (MQ=255)
ggggTAGTATCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACa < 1:800013/81‑1 (MQ=255)
tCAGGTACTGGGGGGGAGTAGATTCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACtcttct < 1:397528/80‑1 (MQ=255)
ggTACTGGGGGGGAGTAGATTCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAg > 2:397544/1‑81 (MQ=255)
gTACTGGGGGGGAGTAGATTCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAg > 2:397547/1‑80 (MQ=255)
ggAGTAGATTCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGc > 1:397552/1‑81 (MQ=255)
ggAGTAGATTCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGc < 2:397529/81‑1 (MQ=255)
aGTAGATTCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCt < 1:397530/81‑1 (MQ=255)
|
GTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCT > NC_000913/2185808‑2185956
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
