Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,371,842 |
T→A |
L312* (TTG→TAG) |
arnT → |
lipid IVA 4‑amino‑4‑deoxy‑L‑arabinosyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,371,842 | 0 | T | A | 100.0%
| 71.6
/ NA
| 21 | L312* (TTG→TAG) | arnT | lipid IVA 4‑amino‑4‑deoxy‑L‑arabinosyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (11/10); total (11/10) |
GCAAGCATTCCGCAACCGTCTATTTGTTGAGCTGGACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATTGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTGGCAGCAAAAAA > NC_000913/2371764‑2371917
|
gCAAGCATTCCGCAACCGTCTATTTGTTGAGCTGGACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATAGc < 2:431836/81‑1 (MQ=255)
tCCGCAACCGTCTATTTGTTGAGCTGGACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATAGCCCACCta > 2:431866/1‑80 (MQ=255)
cAACCGTCTATTTGTTGAGCTGGACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATAGCCCACCTATATTc < 2:431837/81‑1 (MQ=255)
aaCCGTCTATTTGTTGAGCTGGACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATAGCCCACCTATATTCt > 1:431860/1‑81 (MQ=255)
aCCGTCTATTTGTTGAGCTGGACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATAGCCCACCTATATTCtt < 1:431838/81‑1 (MQ=255)
cGTCTATTTGTTGAGCTGGACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATAGCCCACCTATATTCTTTc > 2:431867/1‑81 (MQ=255)
tgttgAGCTGGACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTg > 2:431864/1‑81 (MQ=255)
gttgAGCTGGACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTg < 2:431839/80‑1 (MQ=255)
aGCTGGACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCAtct > 2:431871/1‑81 (MQ=255)
gACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTgg > 2:431865/1‑80 (MQ=255)
cGTCGCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCttt < 2:431840/78‑1 (MQ=255)
gTCGCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTg > 2:431869/1‑81 (MQ=255)
tCGCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTgg > 2:431881/1‑81 (MQ=255)
tCGCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTgg < 2:431841/81‑1 (MQ=255)
cGCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTgg > 1:431872/1‑80 (MQ=255)
gCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTgg > 1:431875/1‑79 (MQ=255)
gCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTGgc < 2:431842/80‑1 (MQ=255)
gCTAAAGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTGgc < 1:431843/80‑1 (MQ=255)
aaGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTGgcagc < 1:431844/79‑1 (MQ=255)
aaGGTAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTGGCAGCaa < 1:431845/81‑1 (MQ=255)
tAAATAGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTGGCAGCaaaaaa > 1:431868/1‑81 (MQ=255)
|
GCAAGCATTCCGCAACCGTCTATTTGTTGAGCTGGACGATAATGCCGCTGCTGTTTTTCTCCGTCGCTAAAGGTAAATTGCCCACCTATATTCTTTCCTGCTTTGCATCTCTGGCAATGCTGATGGCGCATTACGCTTTGCTGGCAGCAAAAAA > NC_000913/2371764‑2371917
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
