Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,750,090 |
C→T |
intergenic (+30/+25) |
yfjD → / ← grpE |
putative inner membrane protein/nucleotide exchange factor GrpE |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,750,090 | 0 | C | T | 100.0%
| 124.1
/ NA
| 34 | intergenic (+30/+25) | yfjD/grpE | putative inner membrane protein/nucleotide exchange factor GrpE |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (18/16); total (18/16) |
GGTAAAAGTTTTTCCTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGCCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTACAGTAACCATCGCCGCACGAATC > NC_000913/2750012‑2750157
|
ggTAAAAGTTTTTCCTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCg > 1:506226/1‑81 (MQ=255)
tAAAAGTTTTTCCTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTg < 2:506193/81‑1 (MQ=255)
aGTTTTTCCTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAat > 1:506243/1‑80 (MQ=255)
gTTTTTCCTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAatta > 1:506228/1‑81 (MQ=255)
ttttCCTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAattat > 1:506221/1‑80 (MQ=255)
ttttCCTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAattat > 1:506229/1‑80 (MQ=255)
tttCCTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAattatt < 1:506194/80‑1 (MQ=255)
ccTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACg < 1:506195/80‑1 (MQ=255)
ccTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACg > 1:506241/1‑80 (MQ=255)
cTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGaa < 1:506196/81‑1 (MQ=255)
tgtgAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGa > 2:506235/1‑79 (MQ=255)
gAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAg > 2:506233/1‑79 (MQ=255)
cGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAAt < 2:506197/81‑1 (MQ=255)
cTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTa < 2:506198/81‑1 (MQ=255)
gcgcGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAg > 1:506227/1‑81 (MQ=255)
cgcgAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTaa < 2:506199/79‑1 (MQ=255)
gcgAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCt > 2:506230/1‑81 (MQ=255)
cgAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCtt < 2:506200/81‑1 (MQ=255)
gagTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTg > 1:506244/1‑81 (MQ=255)
gtgtGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCt > 1:506252/1‑81 (MQ=255)
gtgtGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCt < 2:506201/81‑1 (MQ=255)
cGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGc > 2:506225/1‑80 (MQ=255)
ggAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTa < 2:506202/81‑1 (MQ=255)
gAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTAc < 2:506203/81‑1 (MQ=255)
gAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTAc < 2:506204/81‑1 (MQ=255)
gTAACGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTACAg < 2:506205/81‑1 (MQ=255)
aaCGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTACAGt > 2:506231/1‑80 (MQ=255)
aCGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTACAGTaa > 1:506245/1‑81 (MQ=255)
cGAAAACGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTACAGTAAc < 2:506206/81‑1 (MQ=255)
aaaCGGCCCGGCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTACAGTAACCAt > 1:506232/1‑81 (MQ=255)
ggCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTACAGTAACCATCGCCGCAc > 1:506239/1‑80 (MQ=255)
ggCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTACAGTAACCATCGCCGCACg < 2:506207/81‑1 (MQ=255)
gCATTCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTACAGTAACCATCGCCGCACg > 2:506236/1‑80 (MQ=255)
ttCGCATGCAGGGTCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTACAGTAACCATCGCCGCACGAATc < 1:506208/81‑1 (MQ=255)
|
GGTAAAAGTTTTTCCTGTGAAACCGCTGCGCGAGAGTGTGGCGGAGTAACGAAAACGGCCCGGCATTCGCATGCAGGGCCGTGAATTATTACGAAAGCAGAAATTAAGCTTTTGCTTTCGCTACAGTAACCATCGCCGCACGAATC > NC_000913/2750012‑2750157
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
