Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,782,393 |
(C)5→4 |
coding (334/4581 nt) |
ypjA ← |
adhesin‑like autotransporter YpjA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,782,389 | 0 | C | . | 100.0%
| 128.9
/ NA
| 28 | coding (338/4581 nt) | ypjA | adhesin‑like autotransporter YpjA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (15/13); total (15/13) |
AATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATACCCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTC > NC_000913/2782313‑2782464
|
aaTTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCATTCTCGATTGTCGTACCTGTGGAAATAcccca > 2:511949/1‑80 (MQ=255)
tGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccatca > 2:511946/1‑77 (MQ=255)
ttCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAAt > 2:511950/1‑81 (MQ=255)
tCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAAtt > 2:535785/1‑81 (MQ=255)
ccATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAAtt < 2:511918/80‑1 (MQ=255)
tGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTg > 2:511947/1‑81 (MQ=255)
gCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGt > 1:511954/1‑81 (MQ=255)
tGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCt > 2:511955/1‑81 (MQ=255)
aTACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCt < 1:511919/79‑1 (MQ=255)
aCCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCa > 1:511920/1‑81 (MQ=255)
ccccTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCAcc < 2:511921/81‑1 (MQ=255)
cTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGtt < 1:511922/81‑1 (MQ=255)
ataAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAAt < 1:511923/80‑1 (MQ=255)
ataAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATg > 2:511968/1‑81 (MQ=255)
taAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATgg > 1:511951/1‑81 (MQ=255)
aaaCGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGt > 2:511958/1‑81 (MQ=255)
gTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGta < 1:511924/81‑1 (MQ=255)
tGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGc > 2:511961/1‑81 (MQ=255)
tGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGc > 1:511962/1‑81 (MQ=255)
gCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGc < 1:511925/80‑1 (MQ=255)
ctctCGATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGcc < 2:511926/81‑1 (MQ=255)
gATTGTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCcaca < 1:511927/81‑1 (MQ=255)
gTCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACaaaa < 2:511928/80‑1 (MQ=255)
tCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAAtt < 1:511930/81‑1 (MQ=255)
tCGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAAt < 2:511929/80‑1 (MQ=255)
cGTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTg > 1:511957/1‑81 (MQ=255)
gTACCTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGt > 1:511953/1‑81 (MQ=255)
cTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTAt > 1:511960/1‑80 (MQ=255)
cTGTGGAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTAt > 1:511959/1‑80 (MQ=255)
gAAATA‑CCCCATCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTc < 2:511931/81‑1 (MQ=255)
|
AATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATACCCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTC > NC_000913/2782313‑2782464
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
