Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,374,775 |
C→T |
intergenic (‑286/‑94) |
nanR ← / → dcuD |
DNA‑binding transcriptional dual regulator NanR/putative transporter DcuD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,374,775 | 0 | C | T | 100.0%
| 54.7
/ NA
| 16 | intergenic (‑286/‑94) | nanR/dcuD | DNA‑binding transcriptional dual regulator NanR/putative transporter DcuD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (8/8); total (8/8) |
CTTACAAAATAATCATAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCCGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGATTGACCGTTTTC > NC_000913/3374704‑3374848
|
cTTACAAAATAATCATAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATa < 1:640302/80‑1 (MQ=255)
tACAAAATAATCATAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATaaa > 1:640331/1‑80 (MQ=255)
aTAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCaaaa < 1:640303/81‑1 (MQ=255)
aTAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCaaa < 2:640304/80‑1 (MQ=255)
tatTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACa > 2:640334/1‑81 (MQ=255)
tttAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCgt < 1:640305/80‑1 (MQ=255)
gAAAAATCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGtttt > 1:640324/1‑80 (MQ=255)
aaaaaTCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCa < 1:640306/81‑1 (MQ=255)
aaaaTCACCTCACCTACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCaa > 1:640326/1‑81 (MQ=255)
cctcacctACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCg > 1:640321/1‑81 (MQ=255)
ctcacctACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGt > 2:640322/1‑81 (MQ=255)
acctACAATTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGttt < 1:640307/80‑1 (MQ=255)
aaTTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGAt > 1:640327/1‑81 (MQ=255)
aaTTAAAAACACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGAt > 2:640339/1‑81 (MQ=255)
aaaaCACGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGATTGAcc < 1:640308/81‑1 (MQ=255)
cGACATCTGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGATTGACCGTTTTc < 1:640309/81‑1 (MQ=255)
|
CTTACAAAATAATCATAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCCGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGATTGACCGTTTTC > NC_000913/3374704‑3374848
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
