Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A16 F141 I1 R1	26	83.5	3170358	94.1%	2983306	130.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913_3_pae_tpiA	4,034,189	T→G	S349A (TCA→GCA)	trkH →	potassium transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913_3_pae_tpiA	4,034,189	0	T	G	100.0%	250.9 / NA	72	S349A (TCA→GCA)	trkH	potassium transporter
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (32/40); total (32/40)

CGCTGATGACAATTAACCAGGCGTTTTTCCAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGA  >  NC_000913_3_pae_tpiA/4034046‑4034328

cgcTGATGACAATTAACCAGGCGTTTTTCCAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCCCCGGGGCAACgg                                                                                                                                       >  1:129256/1‑150 (MQ=255)

  cTGATGACAATTAACCAGGCGTTTTTCCAGGTGGTGTCGATGGCGACACCCGCCGGGTTTACAACTGACAGCTTTGCCCGCTTGCAGCTCTTTATGGCGGTACTGCTTTTATGTTCCGCCTTTATGGGCGGTTGCGCCGGGGCAACGGGc                                                                                                                                     <  4:363626/150‑1 (MQ=255)

     atgaCAATTAACCAGGCGTTTTTCCAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGt                                                                                                                                  >  2:907809/1‑150 (MQ=255)

      tgaCAATTAACCAGGCGTTTTTCCAGGTGTTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTg                                                                                                                                 <  2:618315/150‑1 (MQ=255)

      tgaCAATTAACCAGGCGTTTTTCCAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCTCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTg                                                                                                                                 <  3:2034/150‑1 (MQ=255)

      tgaCAATTAACCAGGCGTTTTTCCAGGTGGTGTCGATGGCGACAACCACCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTg                                                                                                                                 <  4:296677/150‑1 (MQ=255)

       gaCAATTAACCAGGCGTTTTTCCAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTgg                                                                                                                                <  2:192611/150‑1 (MQ=255)

        aCAATTAACCAGGCGTTTTTCCAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGc                                                                                                                               <  1:393691/150‑1 (MQ=255)

             tAACCAGGCGTTTTTCCAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCTCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGaa                                                                                                                          <  3:75139/150‑1 (MQ=255)

              aaacAGGCGGTGTTCCAGGGGGTGTCGGTGGCGGCAACCGCCGGGTTTACAACTGACAGCCTTGCCCGCTGGCCGGTCTTTTTGCCGGTACTGCTTTTATGGTCAGCCCTTAACGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAg                                                                                                                         <  2:129256/147‑1 (MQ=255)

                    gCGTTTTTCCAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATc                                                                                                                   <  4:221627/150‑1 (MQ=255)

                     cGTTTTTCCAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATcc                                                                                                                  >  3:590331/1‑150 (MQ=255)

                            ccAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCct                                                                                                           <  2:968543/150‑1 (MQ=255)

                             cAGGTGGTGTCGGTGGCGACGACCGCCGGGTTTGCAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCctg                                                                                                          <  2:107714/150‑1 (MQ=255)

                             cAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCctg                                                                                                          <  1:479560/150‑1 (MQ=255)

                                gtggtgTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCctgctg                                                                                                       >  1:720615/1‑150 (MQ=255)

                                  ggtgTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCctgctgct                                                                                                     <  3:458911/150‑1 (MQ=255)

                                   gtgtCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCctgctgctg                                                                                                    >  1:5244/1‑150 (MQ=255)

                                     gtCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCg                                                                                                                                    <  4:372257/116‑1 (MQ=255)

                                     gtCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCg                                                                                                                                    >  3:372257/1‑116 (MQ=255)

                                     gtCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCg                                                                                                                                    <  3:400314/116‑1 (MQ=255)

                                     gtCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCg                                                                                                                                    >  4:400314/1‑116 (MQ=255)

                                     gtCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGtt                                                                                                  <  3:411558/150‑1 (MQ=255)

                                          tGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGc                                                                                             >  2:829693/1‑150 (MQ=255)

                                           ggCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTaa                                                                                               <  1:498684/147‑1 (MQ=255)

                                           ggCGACAACCGCCGGGATTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTaa                                                                                               >  2:498684/1‑147 (MQ=255)

                                             cGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAgg                                                                                          <  2:42851/150‑1 (MQ=255)

                                              gACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAggg                                                                                         >  1:273346/1‑150 (MQ=255)

                                                     gccgGGTTTACAACTGACATCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGt                                                                                  <  1:696113/150‑1 (MQ=255)

                                                     gccgGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGt                                                                                  >  1:162631/1‑150 (MQ=255)

                                                           tttACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTg                                                                            <  4:590331/150‑1 (MQ=255)

                                                                   tGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACt                                                                    >  1:57151/1‑150 (MQ=255)

                                                                      cAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGt                                                                 <  2:5244/150‑1 (MQ=255)

                                                                      cAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGt                                                                 <  2:748604/150‑1 (MQ=255)

                                                                       aGCATTGCCCGCTGGCCGCTCTTTTTGACGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGAGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTg                                                                >  2:104571/1‑150 (MQ=255)

                                                                             gCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCg                                                          <  4:584759/150‑1 (MQ=255)

                                                                             gCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCg                                                          <  4:584767/150‑1 (MQ=255)

                                                                              cccGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGa                                                         >  1:524150/1‑150 (MQ=255)

                                                                                cGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCCTCCGAAc                                                       <  2:971478/150‑1 (MQ=255)

                                                                                   tGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGcc                                                    <  2:664389/150‑1 (MQ=255)

                                                                                       cGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCt                                                <  2:273346/150‑1 (MQ=255)

                                                                                          tctTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTTCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCgata                                             >  1:320110/1‑150 (MQ=255)

                                                                                          tctTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGa                                                                      >  4:208160/1‑125 (MQ=255)

                                                                                          tctTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGa                                                                      <  3:208160/125‑1 (MQ=255)

                                                                                             ttttGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCa                                          >  4:283913/1‑150 (MQ=255)

                                                                                                  ccGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGCGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAg                                     >  4:561857/1‑150 (MQ=255)

                                                                                                     gTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTg                                  >  1:531343/1‑150 (MQ=255)

                                                                                                     gTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTg                                  >  2:409940/1‑150 (MQ=255)

                                                                                                       aCTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTggg                                <  1:409940/150‑1 (MQ=255)

                                                                                                       aCTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTggg                                <  1:857942/150‑1 (MQ=255)

                                                                                                           ctgttATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCctg                                                                                                          <  1:877590/69‑1 (MQ=255)

                                                                                                           cTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCctg                                                                                                          >  2:877590/1‑72 (MQ=255)

                                                                                                            ttttATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCtat                                              <  2:120134/131‑1 (MQ=255)

                                                                                                            ttttATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCtat                                              >  1:120134/1‑131 (MQ=255)

                                                                                                            ttttATGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATc                           >  3:535645/1‑150 (MQ=255)

                                                                                                                 tGTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATc                                                                                                             <  2:284103/63‑1 (MQ=255)

                                                                                                                 ggTTCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATc                                                                                                             >  1:284103/2‑63 (MQ=255)

                                                                                                                   ttCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACt                    >  4:115862/1‑150 (MQ=255)

                                                                                                                   ttCAGCCTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGGCTATAGCATTAAGCCGGGGAATCGCGCACt                    >  2:329740/1‑150 (MQ=255)

                                                                                                                        ccTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCgg               >  1:746525/1‑150 (MQ=255)

                                                                                                                         cTTTATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGa              >  1:788322/1‑150 (MQ=255)

                                                                                                                          tttATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGaa             >  3:101370/1‑150 (MQ=255)

                                                                                                                           ttATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAAc            <  2:57151/150‑1 (MQ=255)

                                                                                                                           ttATCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAAc            <  4:586579/150‑1 (MQ=255)

                                                                                                                             aTCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCCGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGt          <  1:711872/150‑1 (MQ=255)

                                                                                                                              tCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGcc                                                    >  1:835699/1‑107 (MQ=255)

                                                                                                                              tCGGCGGTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGcc                                                    <  2:835699/107‑1 (MQ=255)

                                                                                                                                   ggTTGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGTAACCGTGAGCTGAAATGCCTGGTGCATCCGAACGCCGTCTATATCATTAAGCTGGGGATTCGCGCACTGCCGGAACGTATCCTc    <  4:475958/150‑1 (MQ=255)

                                                                                                                                    gTTGCGCCGGGGCAACGGGCGGGGGGCTGAAGGTGATCCGCATTCTGCTGCTGTTTAAGCAGGGGAACAGTGAGCTGAAACGACTGGTGCAACCGAACGCCGTCTATCGCATTGAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCg   >  4:4766/1‑150 (MQ=255)

                                                                                                                                     ttGCGCCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGa  <  1:907809/150‑1 (MQ=255)

                                                                                                                                         gcCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGa                                                                      <  1:170911/78‑1 (MQ=255)

                                                                                                                                         gcCGGGGCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGa                                                                      >  2:170911/1‑78 (MQ=255)

CGCTGATGACAATTAACCAGGCGTTTTTCCAGGTGGTGTCGATGGCGACAACCGCCGGGTTTACAACTGACAGCATTGCCCGCTGGCCGCTCTTTTTGCCGGTACTGCTTTTATGTTCAGCCTTTATCGGCGGTTGCGCCGGGTCAACGGGCGGTGGCCTGAAGGTGATCCGCATCCTGCTGCTGTTTAAGCAGGGGAACCGTGAGCTGAAACGACTGGTGCATCCGAACGCCGTCTATAGCATTAAGCTGGGGAATCGCGCACTGCCGGAACGTATCCTCGA  >  NC_000913_3_pae_tpiA/4034046‑4034328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A