Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 2
13 4 11
14 7 18
15 6 13
16 6 20
17 7 13
18 7 14
21 6 14
22 4 8
23 6 11
24 5 17
11 59 141

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 76 1619
Multiple Base Substitutions 2 120
Deletions 15 492
Insertions 8 291
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 101 2522

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 16 0 48.9 1703346 91.6% 1560264 146.2
A0 F0 I1 R1 16 0 48.9 1703346 91.6% 1560264 146.2
A13 F6 I1 R1 15 0 27.8 1046532 91.3% 955483 145.7
A13 F6 I1 R1 15 0 27.8 1046532 91.3% 955483 145.7
A13 F6 I2 R1 16 0 27.9 994488 92.8% 922884 143.7
A13 F6 I2 R1 16 0 27.9 994488 92.8% 922884 143.7
A13 F17 I1 R1 16 0 15.5 620934 94.5% 586782 125.2
A13 F17 I2 R1 16 0 155.1 6190476 94.4% 5843809 127.8
A13 F17 I2 R1 16 0 155.1 6190476 94.4% 5843809 127.8
A13 F30 I1 R1 17 0 127.6 5064566 94.1% 4765756 128.5
A13 F30 I1 R1 17 0 127.6 5064566 94.1% 4765756 128.5
A13 F127 I1 R1 17 0 89.2 3742272 93.1% 3484055 126.4
A13 F127 I1 R1 17 0 89.2 3742272 93.1% 3484055 126.4
A14 F3 I1 R1 17 0 29.0 1011270 93.1% 941492 143.9
A14 F3 I1 R1 17 0 29.0 1011270 93.1% 941492 143.9
A14 F8 I1 R1 16 0 57.5 2022698 92.3% 1866950 143.6
A14 F8 I1 R1 16 0 57.5 2022698 92.3% 1866950 143.6
A14 F19 I0 R1 34 0 56.7 1876034 94.8% 1778480 147.4
A14 F19 I0 R1 34 0 56.7 1876034 94.8% 1778480 147.4
A14 F19 I1 R1 16 0 138.8 5648518 93.3% 5270067 123.5
A14 F19 I1 R1 16 0 138.8 5648518 93.3% 5270067 123.5
A14 F19 I2 R1 16 0 115.4 4747290 93.9% 4457705 124.2
A14 F19 I2 R1 16 0 115.4 4747290 93.9% 4457705 124.2
A14 F36 I1 R1 17 0 131.7 5125768 94.8% 4859228 126.7
A14 F36 I1 R1 17 0 131.7 5125768 94.8% 4859228 126.7
A14 F61 I1 R1 18 0 150.6 5884618 93.9% 5525656 127.6
A14 F61 I1 R1 18 0 150.6 5884618 93.9% 5525656 127.6
A14 F87 I1 R1 16 0 168.8 7184090 92.8% 6666835 123.7
A14 F87 I1 R2 17 0 76.1 3237006 92.4% 2990993 123.7
A14 F151 I1 R1 22 0 137.2 5304824 94.1% 4991839 128.4
A14 F151 I1 R1 22 0 137.2 5304824 94.1% 4991839 128.4
A15 F3 I1 R1 17 0 41.7 1441332 93.3% 1344762 144.4
A15 F3 I1 R1 17 0 41.7 1441332 93.3% 1344762 144.4
A15 F8 I1 R1 16 0 40.3 1420662 94.4% 1341104 140.4
A15 F8 I1 R1 16 0 40.3 1420662 94.4% 1341104 140.4
A15 F19 I1 R1 15 0 12.7 481992 93.3% 449698 131.1
A15 F36 I1 R1 18 0 125.4 4757244 93.3% 4438508 132.3
A15 F36 I1 R1 18 0 125.4 4757244 93.3% 4438508 132.3
A15 F36 I2 R1 17 0 99.4 3643914 93.9% 3421635 135.8
A15 F36 I2 R1 17 0 99.4 3643914 93.9% 3421635 135.8
A15 F94 I1 R1 19 0 207.6 8525636 93.6% 7979995 122.4
A15 F94 I1 R1 19 0 207.6 8525636 93.6% 7979995 122.4
A15 F141 I1 R1 21 0 114.5 4481172 94.2% 4221264 126.9
A15 F141 I1 R1 21 0 114.5 4481172 94.2% 4221264 126.9
A16 F3 I1 R1 16 0 53.0 1853282 94.4% 1749498 141.5
A16 F3 I1 R1 16 0 53.0 1853282 94.4% 1749498 141.5
A16 F7 I1 R1 16 0 44.4 1557844 93.4% 1455026 142.3
A16 F7 I1 R1 16 0 44.4 1557844 93.4% 1455026 142.3
A16 F19 I0 R1 32 0 84.8 2851444 95.0% 2708871 147.9
A16 F19 I0 R1 32 0 84.8 2851444 95.0% 2708871 147.9
A16 F19 I1 R1 18 0 124.3 4698080 94.5% 4439685 130.6
A16 F19 I1 R1 18 0 124.3 4698080 94.5% 4439685 130.6
A16 F19 I2 R1 17 0 101.9 4194818 93.7% 3930544 121.4
A16 F19 I2 R1 17 0 101.9 4194818 93.7% 3930544 121.4
A16 F36 I1 R1 17 0 110.2 4234624 94.5% 4001719 130.9
A16 F36 I1 R1 17 0 110.2 4234624 94.5% 4001719 130.9
A16 F36 I2 R1 22 0 175.4 6701188 93.5% 6265610 132.1
A16 F36 I2 R1 22 0 175.4 6701188 93.5% 6265610 132.1
A16 F36 I2 R2 23 0 72.9 2934420 93.3% 2737813 126.5
A16 F36 I2 R2 23 0 72.9 2934420 93.3% 2737813 126.5
A16 F95 I1 R1 24 0 144.1 5354220 94.2% 5043675 133.5
A16 F95 I1 R1 24 0 144.1 5354220 94.2% 5043675 133.5
A16 F141 I1 R1 26 0 83.5 3170358 94.1% 2983306 130.9
A16 F141 I1 R1 26 0 83.5 3170358 94.1% 2983306 130.9
A17 F3 I1 R1 15 0 66.3 2212468 93.9% 2077507 141.6
A17 F3 I1 R1 15 0 66.3 2212468 93.9% 2077507 141.6
A17 F6 I1 R1 16 0 39.4 1365814 93.3% 1274304 143.9
A17 F6 I1 R1 16 0 39.4 1365814 93.3% 1274304 143.9
A17 F17 I1 R1 6 0 0.0 0 0.0% 0 0.0
A17 F23 I1 R1 16 0 57.8 2174870 95.1% 2068301 133.4
A17 F23 I1 R1 16 0 57.8 2174870 95.1% 2068301 133.4
A17 F32 I1 R1 16 0 62.7 2456702 94.1% 2311756 129.8
A17 F32 I1 R1 16 0 62.7 2456702 94.1% 2311756 129.8
A17 F86 I1 R1 18 0 102.2 3646390 94.5% 3445838 141.6
A17 F86 I1 R1 18 0 102.2 3646390 94.5% 3445838 141.6
A17 F133 I1 R1 18 0 54.6 2042212 95.3% 1946228 140.1
A17 F133 I1 R1 18 0 54.6 2042212 95.3% 1946228 140.1
A18 F5 I1 R1 16 0 23.8 843492 94.0% 792882 143.4
A18 F5 I1 R1 16 0 23.8 843492 94.0% 792882 143.4
A18 F7 I1 R1 17 0 36.9 1277160 95.0% 1213302 141.3
A18 F7 I1 R1 17 0 36.9 1277160 95.0% 1213302 141.3
A18 F16 I1 R1 16 0 225.0 8108110 94.6% 7670272 139.6
A18 F16 I1 R1 16 0 225.0 8108110 94.6% 7670272 139.6
A18 F31 I1 R1 17 0 84.2 3108850 94.9% 2950298 136.5
A18 F31 I1 R1 17 0 84.2 3108850 94.9% 2950298 136.5
A18 F80 I1 R1 17 0 71.9 2678022 95.2% 2549476 135.5
A18 F80 I1 R1 17 0 71.9 2678022 95.2% 2549476 135.5
A18 F101 I1 R1 18 0 93.2 3381022 95.2% 3218732 137.8
A18 F101 I1 R1 18 0 93.2 3381022 95.2% 3218732 137.8
A18 F130 I1 R1 38 0 76.4 2725422 95.3% 2597327 137.1
A18 F130 I1 R1 38 0 76.4 2725422 95.3% 2597327 137.1
A21 F5 I0 R1 24 0 41.2 1474486 89.7% 1322613 148.8
A21 F5 I0 R1 24 0 41.2 1474486 89.7% 1322613 148.8
A21 F5 I1 R1 17 0 45.4 1637102 94.6% 1548698 142.2
A21 F5 I1 R1 17 0 45.4 1637102 94.6% 1548698 142.2
A21 F12 I1 R1 17 0 33.0 1187876 93.7% 1113039 142.3
A21 F12 I1 R1 17 0 33.0 1187876 93.7% 1113039 142.3
A21 F26 I1 R1 16 0 35.0 1240938 93.0% 1154072 143.2
A21 F26 I1 R1 16 0 35.0 1240938 93.0% 1154072 143.2
A21 F36 I1 R1 19 0 36.4 1272818 94.0% 1196448 142.2
A21 F36 I1 R1 19 0 36.4 1272818 94.0% 1196448 142.2
A21 F73 I1 R1 19 0 39.3 1399748 93.9% 1314363 140.8
A21 F73 I1 R1 19 0 39.3 1399748 93.9% 1314363 140.8
A21 F99 I1 R1 19 0 55.7 1970560 92.7% 1826709 142.9
A21 F99 I1 R1 19 0 55.7 1970560 92.7% 1826709 142.9
A22 F6 I1 R1 17 0 31.0 1139998 92.7% 1056778 142.5
A22 F6 I1 R1 17 0 31.0 1139998 92.7% 1056778 142.5
A22 F27 I1 R1 17 0 36.9 1290494 93.0% 1200159 143.6
A22 F27 I1 R1 17 0 36.9 1290494 93.0% 1200159 143.6
A22 F64 I1 R1 18 0 58.3 2092080 92.1% 1926805 145.7
A22 F64 I1 R1 18 0 58.3 2092080 92.1% 1926805 145.7
A22 F101 I1 R1 19 0 63.1 2283916 94.2% 2151448 141.8
A22 F101 I1 R1 19 0 63.1 2283916 94.2% 2151448 141.8
A23 F6 I1 R1 16 0 59.9 2107472 93.9% 1978916 143.0
A23 F6 I1 R1 16 0 59.9 2107472 93.9% 1978916 143.0
A23 F10 I1 R1 17 0 30.2 1100966 93.3% 1027201 143.3
A23 F10 I1 R1 17 0 30.2 1100966 93.3% 1027201 143.3
A23 F18 I1 R1 18 0 29.5 1031908 94.0% 969993 141.9
A23 F18 I1 R1 18 0 29.5 1031908 94.0% 969993 141.9
A23 F28 I1 R1 18 0 13.2 538532 91.0% 490064 126.1
A23 F79 I1 R1 20 0 28.5 998386 94.1% 939481 141.6
A23 F79 I1 R1 20 0 28.5 998386 94.1% 939481 141.6
A23 F107 I1 R1 19 0 39.5 1386814 92.9% 1288350 143.2
A23 F107 I1 R1 19 0 39.5 1386814 92.9% 1288350 143.2
A24 F7 I1 R1 6 0 0.0 0 0.0% 0 0.0
A24 F21 I1 R1 17 0 36.5 1286766 92.7% 1192832 143.7
A24 F21 I1 R1 17 0 36.5 1286766 92.7% 1192832 143.7
A24 F31 I1 R1 16 0 84.1 2897778 94.0% 2723911 143.0
A24 F31 I1 R1 16 0 84.1 2897778 94.0% 2723911 143.0
A24 F31 I2 R1 18 0 53.0 1873152 93.2% 1745777 143.0
A24 F31 I2 R1 18 0 53.0 1873152 93.2% 1745777 143.0
A24 F31 I3 R1 19 0 130.1 4745868 94.1% 4465861 139.3
A24 F31 I3 R1 19 0 130.1 4745868 94.1% 4465861 139.3
A24 F31 I4 R1 17 0 109.4 3963580 95.0% 3765401 137.7
A24 F31 I4 R1 17 0 109.4 3963580 95.0% 3765401 137.7
A24 F80 I1 R1 18 0 118.6 4166156 93.9% 3912020 141.3
A24 F80 I1 R1 18 0 118.6 4166156 93.9% 3912020 141.3
A24 F106 I1 R1 19 0 81.9 2890106 93.9% 2713809 142.8
A24 F106 I1 R1 19 0 81.9 2890106 93.9% 2713809 142.8
A24 F106 I2 R1 20 0 33.2 1150230 93.5% 1075465 143.8
A24 F106 I2 R1 20 0 33.2 1150230 93.5% 1075465 143.8

Mutation Needle Plot

Mutation Targets

Entries to show