Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A24 F80 I1 R1 18 118.6 4166156 93.9% 3912020 141.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_pae_tpiA 1,756,121 Δ557 bp coding (424‑980/1413 nt) pykF → pyruvate kinase I

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_pae_tpiA 1756121 1756677 557 98 [0] [0] 98 pykF pyruvate kinase I

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 17561200 (0.000)98 (0.830) 80/280 0.4 100% coding (423/1413 nt) pykF pyruvate kinase I
?NC_000913_3_pae_tpiA 1756678 = 0 (0.000)coding (981/1413 nt) pykF pyruvate kinase I

GATK/CNVnator alignment

N/A