Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F80 I1 R1 83 52.9 1240211 98.2% 1217887 216.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,792,838 T→C V35A (GTG→GCG)  gabT → 4‑aminobutyrate aminotransferase GabT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,792,8380TC97.4% 131.9 / ‑6.5 39V35A (GTG→GCG) gabT4‑aminobutyrate aminotransferase GabT
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (16/22);  total (16/23)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

TTATTTCCAATGAAGTGGCCCCGTTCGGCGGCATCAAAGCCTCGGGTCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGTGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGAC  >  NC_000913/2792603‑2793063
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                 
ttattTCCAATGAAGTGGCCCCGTTCGGCGGCATCAAAGCCTCGGGTCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGcgtg                                                                                                                                                                                                                                <  1:362399/239‑1 (MQ=255)
        aaTGAAGTGGCCCCGTTCGGCGGCATCAAAGCCTCGGGTCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGa                                                                                                                                                                                                                       <  2:62014/240‑1 (MQ=255)
                    ccGTTCGGCGGCATCAAAGCCTCGGGTCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCg                                                                                                                                                                                                                 <  2:446987/234‑1 (MQ=255)
                      gTTCGGCGGCATCAAAGCCTCGGGTCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTAt                                                                                                                                                                                                          >  1:144243/1‑239 (MQ=255)
                                 tCAAAGCCTCGGGTCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTcgc                                                                                                                                                                                               >  2:618542/1‑239 (MQ=255)
                                         tCGGGTCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGag                                                                                                                                                                                      >  2:606903/1‑239 (MQ=255)
                                             gTCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCg                                                                                                                                                                                  <  1:442861/240‑1 (MQ=255)
                                             gTCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCg                                                                                                                                                                                  <  1:223143/240‑1 (MQ=255)
                                              tCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCg                                                                                                                                                                                  <  2:484000/239‑1 (MQ=255)
                                                 gggTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTg                                                                                                                                                                               >  1:105307/1‑239 (MQ=255)
                                                      gTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCg                                                                                                                                                                                  <  1:450028/231‑1 (MQ=255)
                                                       tGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCt                                                                                                                                                                             >  1:254486/1‑235 (MQ=255)
                                                             ttCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGAt                                                                                                                                                                                      >  2:398526/1‑220 (MQ=255)
                                                              tCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGc                                                                                                                                                                  >  1:541059/1‑239 (MQ=255)
                                                              tCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCAGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGc                                                                                                                                                                  >  2:270340/1‑239 (MQ=255)
                                                                       ggCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTg                                                                                                                                                                                                               >  2:4221/1‑185 (MQ=255)
                                                                                        aGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCgg                                                                                                                                       >  1:499228/1‑240 (MQ=255)
                                                                                                aaTATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAgcg                                                                                                                               <  1:233109/240‑1 (MQ=255)
                                                                                                             cGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGaaaaaa                                                                                                                   <  1:401672/239‑1 (MQ=255)
                                                                                                                  tttAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGACAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTg                                                                                                                                                                                                                        >  2:537812/1‑133 (MQ=255)
                                                                                                                       cTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCacac                                                                                                        <  1:171002/240‑1 (MQ=255)
                                                                                                                          gagaATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTg                                                                                                     >  2:482000/1‑240 (MQ=255)
                                                                                                                              aTGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTc                                                                                                 <  1:618551/240‑1 (MQ=255)
                                                                                                                                             aaTAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTAc                                                                                  <  1:530057/240‑1 (MQ=255)
                                                                                                                                              aTAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACg                                                                                 >  1:48585/1‑240 (MQ=255)
                                                                                                                                                  agagTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGcc                                                                             <  1:237613/240‑1 (MQ=255)
                                                                                                                                                   gagTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGcc                                                                             <  1:293681/239‑1 (MQ=255)
                                                                                                                                                        aaTGCAGCGCCGCAGGCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGcc                                                                             <  2:4762/234‑1 (MQ=255)
                                                                                                                                                                   gcAGTCAGGCGATTCCCCGTGGCGTTGGGCGAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCg                                                            <  2:110520/240‑1 (MQ=255)
                                                                                                                                                                   gcAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGcc                                                                             <  2:117311/223‑1 (MQ=255)
                                                                                                                                                                   gcAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCg                                                            <  2:95608/240‑1 (MQ=255)
                                                                                                                                                                    cAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCga                                                           <  2:337942/240‑1 (MQ=255)
                                                                                                                                                                                     gTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGcc                                                                             <  2:33305/205‑1 (MQ=255)
                                                                                                                                                                                             gggCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCggg                                   >  2:453233/1‑239 (MQ=255)
                                                                                                                                                                                             gggCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCggg                                   >  2:519545/1‑239 (MQ=255)
                                                                                                                                                                                              ggCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGCGCGAGATTATGAATCAGAAGGTGCCGGGCg                                 >  2:204151/1‑240 (MQ=255)
                                                                                                                                                                                                                   cTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGcc                                                                             <  2:557908/175‑1 (MQ=255)
                                                                                                                                                                                                                   cTGACCGCGCGGAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACgctg             <  1:454168/239‑1 (MQ=255)
                                                                                                                                                                                                                             ggAAAACTGCCGGGCGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGAc  <  1:519553/240‑1 (MQ=255)
                                                                                                                                                                                                                                      ccGGGTGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGcc                                                                             <  2:422997/156‑1 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                 
TTATTTCCAATGAAGTGGCCCCGTTCGGCGGCATCAAAGCCTCGGGTCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATCGGTCTTTAACTGGAGAATGCGAATGAACAGCAATAAAGAGTTAATGCAGCGCCGCAGTCAGGCGATTCCCCGTGGCGTTGGGCAAATTCACCCGATTTTCGCTGACCGCGCGGAAAACTGCCGGGTGTGGGACGTTGAAGGCCGTGAGTATCTTGATTTCGCGGGCGGGATTGCGGTGCTCAATACCGGGCACCTGCATCCGAAGGTGGTGGCCGCGGTGGAAGCGCAGTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGAC  >  NC_000913/2792603‑2793063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A