Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F80 I1 R1 83 52.9 1240211 98.2% 1217887 216.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,875,269 T→C T51A (ACC→GCC)  cysN ← sulfate adenylyltransferase subunit 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,875,2690TC100.0% 149.7 / NA 40T51A (ACC→GCC) cysNsulfate adenylyltransferase subunit 1
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (15/25);  total (15/25)

CATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGTATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGACCCCGCCTGGTCGCGGTCAATCACGCGGCCCTGACGT  >  NC_000913/2875048‑2875493
                                                                                                                                                                                                                             |                                                                                                                                                                                                                                
cATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTg                                                                                                                                                                                                                            <  2:144894/228‑1 (MQ=255)
        gggTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCaga                                                                                                                                                                                                         <  2:160728/239‑1 (MQ=255)
          gtgtACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATc                                                                                                                                                                                                            >  1:583937/1‑234 (MQ=255)
             tACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACtt                                                                                                                                                                                                   >  2:596656/1‑240 (MQ=255)
                  cTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGcc                                                                                                                                                                                              >  2:107938/1‑240 (MQ=255)
                       gCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCAt                                                                                                                                                                                         >  1:375478/1‑240 (MQ=255)
                        cccTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATc                                                                                                                                                                                        <  1:378603/240‑1 (MQ=255)
                                   cGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACca                                                                                                                                                                              <  1:167473/239‑1 (MQ=255)
                                   cGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACca                                                                                                                                                                              <  1:378091/239‑1 (MQ=255)
                                          aataaATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCa                                                                                                                                                                                                               <  2:480367/199‑1 (MQ=255)
                                                                               gCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAatcatc                                                                                                                                 <  1:554330/240‑1 (MQ=255)
                                                                                 cACGTCAATGGTGATGGCCTGTTCGCGCCCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCa                                                                                                                               <  2:18125/240‑1 (MQ=255)
                                                                                        aTGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGACGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTAtg                                                                                                                                                 >  2:301505/1‑215 (MQ=255)
                                                                                          gttGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACgcagca                                                                                                                                                           <  2:595037/201‑1 (MQ=255)
                                                                                              aTGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGAcgcc                                                                                                                   >  1:606693/1‑239 (MQ=255)
                                                                                                 cccTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTgcg                                                                                                                                         >  1:449894/1‑214 (MQ=255)
                                                                                                 cccTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTgcg                                                                                                                                         <  2:449886/214‑1 (MQ=255)
                                                                                                      ttCGCGCTCAGCTTCCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCAtt                                                                                                          >  2:333911/1‑240 (MQ=255)
                                                                                                       tCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTg                                                                                                         <  1:399075/240‑1 (MQ=255)
                                                                                                                  ttGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATttgttg                                                                                              <  1:107940/240‑1 (MQ=255)
                                                                                                                     cAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGc                                                                                           <  1:547730/240‑1 (MQ=255)
                                                                                                                          cGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTg                                                                                      <  1:185044/240‑1 (MQ=255)
                                                                                                                                  agcagAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACgcagca                                                                                                                                                           >  2:66820/1‑163 (MQ=255)
                                                                                                                                    cagAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGCTTTGTTGTGCAAGTGCGGTGTTCAt                                                                            >  1:412022/1‑240 (MQ=255)
                                                                                                                                      gagCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCg                                                                                                      <  2:224729/212‑1 (MQ=255)
                                                                                                                                                     tttCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCt                                                             <  2:23315/238‑1 (MQ=255)
                                                                                                                                                                gTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAg                                                <  1:460724/240‑1 (MQ=255)
                                                                                                                                                                         cGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGtttttt                                                   <  2:309539/228‑1 (MQ=255)
                                                                                                                                                                         cGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGa                                       >  1:68554/1‑240 (MQ=255)
                                                                                                                                                                              aCTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGAcccc                                   >  1:464396/1‑239 (MQ=255)
                                                                                                                                                                                tGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCa                                                 <  2:405708/223‑1 (MQ=255)
                                                                                                                                                                                 gTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGACCCCGcc                                <  2:174263/239‑1 (MQ=255)
                                                                                                                                                                                 gTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGACCCCGcc                                <  1:364796/239‑1 (MQ=255)
                                                                                                                                                                                       aTGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGACCCCGCCTg                              >  2:578916/1‑235 (MQ=255)
                                                                                                                                                                                               aTGAGAGCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGACCCCGCCTGGTCGCGGTCAATc                 >  1:45239/1‑240 (MQ=255)
                                                                                                                                                                                                  agagCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGACCCCGCCTGGTCGCGGTCAATCAcg              <  1:531227/240‑1 (MQ=255)
                                                                                                                                                                                                   gagCTGATCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGACCCCGCCTGGTCGCGGTCAATCAcg              <  1:112574/239‑1 (MQ=255)
                                                                                                                                                                                                          tCTTCGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGACCCCGCCTGGTCGCGGTCAATCACGCGGCCCTg      <  1:548135/240‑1 (MQ=255)
                                                                                                                                                                                                              cGTAGATTTGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGACCCCGCCTGGTCGCGGTCAATCACGCGGCCCTGACGt  >  1:495171/1‑240 (MQ=255)
                                                                                                                                                                                                                     ttGGCGGGCATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGACCCCGCCTGGTCGCGGTCAATCAcgc             <  1:486537/222‑1 (MQ=255)
                                                                                                                                                                                                                             |                                                                                                                                                                                                                                
CATATTGCGGGTGTACTGCTCGTGCCCTGGGGTGTCGGCGATAATAAATTTACGCTTCTCGGTAGAGAAATAGCGGTAGGCCACGTCAATGGTGATGCCCTGTTCGCGCTCAGCTTGCAGGCCGTCCACCAGCAGAGCCAGATCCAGCTTTTCGCCCTGGGTGCCGTGACGCTTACTGTCGTTATGCAGCGATGAGAGCTGATCTTCGTAGATTTGGCGGGTATCGTGCAGCAGACGACCAATCAGAGTACTTTTGCCGTCATCGACGCTACCACAGGTCAGAAAACGCAGCAGGCTTTTATGTTGTTGCGCAATCATCCAGGCTTCGACGCCGCCTTCATTGGCGATTTGTTGTGCAAGTGCGGTGTTCATCTTAAAAATACCCCTGACGTTTTTTCAGCTCCATAGACCCCGCCTGGTCGCGGTCAATCACGCGGCCCTGACGT  >  NC_000913/2875048‑2875493

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A