Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F80 I1 R1 83 52.9 1240211 98.2% 1217887 216.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,914,585 A→G Y206H (TAT→CAT)  glmU ← fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,914,5850AG100.0% 190.7 / NA 55Y206H (TAT→CAT) glmUfused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (25/30);  total (25/30)

TGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATACGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGATACGTCCATAACCGGTCGGATCATCCAGTTTCACCGTCAGCAGAC  >  NC_000913/3914363‑3914821
                                                                                                                                                                                                                              |                                                                                                                                                                                                                                            
tgatAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGt                                                                                                                                                                                                                             <  2:3142/240‑1 (MQ=255)
   tAACGTTAGTATCAATTTCAACATCGCGCCCGTGAG‑TAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCgg                                                                                                                                                                                                                          >  2:17090/1‑239 (MQ=255)
    aaCGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCgg                                                                                                                                                                                                                          <  1:31725/239‑1 (MQ=255)
          aGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATgt                                                                                                                                                                                                                    >  2:36295/1‑239 (MQ=255)
                   ttCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGcc                                                                                                                                                                                                          <  1:349001/240‑1 (MQ=255)
                   ttCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGcc                                                                                                                                                                                                          <  1:541985/240‑1 (MQ=255)
                           cgcgCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCat                                                                                                                                                                                                  <  2:384269/240‑1 (MQ=255)
                           cgcgCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCat                                                                                                                                                                                                  <  1:212057/240‑1 (MQ=255)
                                          gCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCgg                                                                                                                                                                                                                          <  1:23757/201‑1 (MQ=255)
                                          gCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCgg                                                                                                                                                                                                                          >  2:23756/1‑201 (MQ=255)
                                             tACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTc                                                                                                                                                                                 >  1:384833/1‑239 (MQ=255)
                                             tACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTc                                                                                                                                                                                 >  2:167596/1‑239 (MQ=255)
                                              aCCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCgc                                                                                                                                                                               >  1:408025/1‑240 (MQ=255)
                                               ccACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGAt                                                                                                                                                                                                                      >  1:303371/1‑200 (MQ=255)
                                               ccACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGGTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGGGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCgcc                                                                                                                                                                              >  2:258990/1‑240 (MQ=255)
                                                 aCGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCaat                                                                                                                                                                                                                                  >  2:326674/1‑186 (MQ=255)
                                                         cAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGtt                                                                                                                                                                    >  2:189706/1‑240 (MQ=255)
                                                                      aTCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGcc                                                                                                                                                       >  2:259626/1‑240 (MQ=255)
                                                                          cgcAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGtt                                                                                                                                                    <  2:63523/239‑1 (MQ=255)
                                                                                    cGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGaa                                                                                                                                         >  2:345223/1‑240 (MQ=255)
                                                                                      ccTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGcc                                                                                                                                                                                                          <  1:385611/173‑1 (MQ=255)
                                                                                         gCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAg                                                                                                                                                                                                     >  2:182523/1‑175 (MQ=255)
                                                                                          cTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCgg                                                                                                                                   <  1:444373/240‑1 (MQ=255)
                                                                                               agcagTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCatat                                                                                                                                                              >  2:576290/1‑208 (MQ=255)
                                                                                               agcagTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGtt                                                                                                                               <  1:563044/239‑1 (MQ=255)
                                                                                               agcagTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATCCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGtt                                                                                                                               >  2:577935/1‑239 (MQ=255)
                                                                                                      tttCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATCCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCt                                                                                                                       <  1:577944/240‑1 (MQ=255)
                                                                                                      tttCAGCCTCTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGt                                                                                                                                                                     <  2:554563/194‑1 (MQ=255)
                                                                                                                ttCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGAt                                                                                                                            >  2:593401/1‑225 (MQ=255)
                                                                                                                ttCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGAc                                                                                                              >  2:18761/1‑239 (MQ=255)
                                                                                                                ttCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACg                                                                                                             >  1:108072/1‑240 (MQ=255)
                                                                                                                                   tCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCTGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCt                                                                                          >  2:286624/1‑240 (MQ=255)
                                                                                                                                   tCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAAt                                                                                                                   >  2:478300/1‑215 (MQ=255)
                                                                                                                                             agagTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTCGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGACTCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTc                                                                                  >  2:424564/1‑238 (MQ=255)
                                                                                                                                                              ttCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGccagccag                                                                                                                                                                        >  2:333019/1‑135 (MQ=255)
                                                                                                                                                                         tACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACg                                                    >  1:495669/1‑240 (MQ=255)
                                                                                                                                                                               gCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGAt                                              <  1:154353/240‑1 (MQ=255)
                                                                                                                                                                               gCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGAt                                              <  1:169293/240‑1 (MQ=255)
                                                                                                                                                                                cTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGAt                                              <  2:326374/239‑1 (MQ=255)
                                                                                                                                                                                cTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGAt                                              <  1:513226/239‑1 (MQ=255)
                                                                                                                                                                                cTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGAt                                              <  2:272715/239‑1 (MQ=255)
                                                                                                                                                                                cTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGAt                                              <  1:345230/239‑1 (MQ=255)
                                                                                                                                                                                cTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGAt                                              <  1:475403/239‑1 (MQ=255)
                                                                                                                                                                                 ttAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGAtcc                                            >  2:375406/1‑238 (MQ=255)
                                                                                                                                                                                  tAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTTATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCt                                                                                          <  2:185121/193‑1 (MQ=255)
                                                                                                                                                                                       gTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGATACGTCCAt                                      <  1:167600/240‑1 (MQ=255)
                                                                                                                                                                                            ggATGAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTtgtg                                                                                     <  2:308571/188‑1 (MQ=255)
                                                                                                                                                                                                gAACGGCGACGATTTCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGATACGTCCATa                                     <  2:246003/232‑1 (MQ=255)
                                                                                                                                                                                                 aaCGGCGCTGATTTCATGCCATACTTGTTGGGACAGCGCAATAATATCGGTGATGTTGTAGTCGCCCTGAGCATTATTGTTGGTCAGCTTCtccaggcat                                                                                                                                                                        <  2:301871/100‑2 (MQ=255)
                                                                                                                                                                                                            tttCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGATACGTCCATAACCGGTCGGATCATCCAGtt                 <  1:259632/240‑1 (MQ=255)
                                                                                                                                                                                                             ttCACGCCCTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTtgtg                                                                                     <  2:309075/171‑1 (MQ=255)
                                                                                                                                                                                                                   cccTTCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGAt                                              <  2:583586/204‑1 (MQ=255)
                                                                                                                                                                                                                      ttCCTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGATACGTCCATAACCGGTCGGATCATCCAGTTTCACCGTcag       >  1:364175/1‑240 (MQ=255)
                                                                                                                                                                                                                         cTGATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGATACGTCCATAACCGGTCGGATCATCCAGTTTCACCGTcagcag    <  1:139507/240‑1 (MQ=255)
                                                                                                                                                                                                                           gATGCGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGATACGTCCATAACCGGTCGGATCATCCAGTTTCACCGTCAGCAGAc  <  1:447063/240‑1 (MQ=255)
                                                                                                                                                                                                                              |                                                                                                                                                                                                                                            
TGATAACGTTAGTATCAATTTCAACATCGCGCCCGTGAGTTAGCGTACCACGCAGATCAAAACGCGCTGGATCGCGCAGCATAACGCCTGCTAACAGCAGTTTTTCAGCCTGTTCGGACTGATAAACACGCTCCAGACGGGAGAGTTGCAGGCGGTTATTCACGCCTTCTACTTCGCTTAAACGTTGCGGATGAACGGCGACGATTTCACGCCCTTCCTGATACGCCAGCGCAATAATGTCGGTGATGTAGTATTCGCCCTGAGCATTATTGTTGGTCAGCTTCGCCAGCCAGCGTTTCATATCTGCGCCGTTGGCAATCAGAATGCCGGTGTTGATCTCCTGAATCTGACGCTGCTCGTCGGTGGCATCTTTGTGCTCAACAATGCCGGTAACTTTGCCGTTTTCACGGGTGATACGTCCATAACCGGTCGGATCATCCAGTTTCACCGTCAGCAGAC  >  NC_000913/3914363‑3914821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A