Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A23 F60 I1 R1	13	146.1	4914750	99.0%	4865602	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,502,273	G→C	G336R (GGT→CGT)	frlB →	fructoselysine 6‑phosphate deglycase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,502,273	0	G	C	100.0%	382.8 / NA	102	G336R (GGT→CGT)	frlB	fructoselysine 6‑phosphate deglycase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (48/54); total (48/54)

Only 100 of 107 total aligned reads displayed.

TCATCGATTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTGGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGATGCA  >  NC_000913/3502136‑3502405

tCATCGATTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACggtcgt                                                                                                                                    >  1:1514844/1‑140 (MQ=255)

tCATCGATTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACggtcgt                                                                                                                                    <  2:1872723/140‑1 (MQ=255)

 cATCGATTCCGCCGAAATTTCGCAAGGGCTGCCCCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACACCCCGGATGAACGCCGCTATTACGgtcgtc                                                                                                                                   <  1:1762079/140‑1 (MQ=255)

 cATCGATTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGgtcgtc                                                                                                                                   <  1:1427882/140‑1 (MQ=255)

   tCGATTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCtg                                                                                                                                 >  1:663630/1‑140 (MQ=255)

   tCGATTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCtg                                                                                                                                 >  2:1401106/1‑140 (MQ=255)

   tCGATTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCtg                                                                                                                                 <  1:2038680/140‑1 (MQ=255)

    cGATTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCtgg                                                                                                                                <  1:1483620/140‑1 (MQ=255)

     gATTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCtggt                                                                                                                               >  2:914566/1‑140 (MQ=255)

      aTTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCtggtg                                                                                                                              <  2:657311/140‑1 (MQ=255)

      aTTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCtggtg                                                                                                                              <  2:1514844/140‑1 (MQ=255)

      aTTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCtggtg                                                                                                                              <  1:1100941/140‑1 (MQ=255)

      aTTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCtggtg                                                                                                                              <  1:711900/140‑1 (MQ=255)

      aTTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCtggtg                                                                                                                              >  2:711900/1‑140 (MQ=255)

       ttACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCtggtgg                                                                                                                             <  2:1199569/140‑1 (MQ=255)

        tACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGa                                                                                                                            <  1:862775/140‑1 (MQ=255)

          cGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAat                                                                                                                          >  2:1347662/1‑140 (MQ=255)

          cGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAat                                                                                                                          >  2:920988/1‑140 (MQ=255)

             cGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATAtt                                                                                                                       <  2:2281186/140‑1 (MQ=255)

              gAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTa                                                                                                                      <  2:150332/140‑1 (MQ=255)

              gAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTa                                                                                                                      <  2:673737/140‑1 (MQ=255)

              gAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTa                                                                                                                      <  1:1940950/140‑1 (MQ=255)

              gAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTa                                                                                                                      <  1:1401106/140‑1 (MQ=255)

              gAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTa                                                                                                                      <  1:7644/140‑1 (MQ=255)

               aaaTTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTaa                                                                                                                     >  2:1868787/1‑140 (MQ=255)

                  tttCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGACGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATcc                                                                                                                  <  1:2305715/140‑1 (MQ=255)

                      gCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCctct                                                                                                              <  1:1347662/140‑1 (MQ=255)

                         aGGGCTGCACCCGTGGCTGGCACCATTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTccc                                                                                                           <  1:1417749/140‑1 (MQ=255)

                         aGGGCTGCACCAGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTccc                                                                                                           >  1:1587564/1‑140 (MQ=255)

                           ggCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTcccgg                                                                                                         <  1:2002449/140‑1 (MQ=255)

                                     gTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACg                                                                                               >  1:2199924/1‑140 (MQ=255)

                                      tggctggcACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACgg                                                                                              >  2:1955752/1‑140 (MQ=255)

                                      tggctggcACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACgg                                                                                              >  2:2224525/1‑140 (MQ=255)

                                      tggctggcACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACgg                                                                                              >  1:51993/1‑140 (MQ=255)

                                      tggctggcACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACgg                                                                                              >  1:402063/1‑140 (MQ=255)

                                      tggctggcACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACgg                                                                                              >  1:2429794/1‑140 (MQ=255)

                                        gctggcACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGc                                                                                            <  1:370027/140‑1 (MQ=255)

                                        gctggcACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGc                                                                                            <  2:2116973/140‑1 (MQ=255)

                                        gctggcACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGc                                                                                            <  1:1089838/140‑1 (MQ=255)

                                        gctggcACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGc                                                                                            <  1:1955752/140‑1 (MQ=255)

                                        gctggcACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGc                                                                                            <  1:920988/140‑1 (MQ=255)

                                        gctggcACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGc                                                                                            <  2:1050285/140‑1 (MQ=255)

                                             cACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGAt                                                                                       >  2:1976031/1‑140 (MQ=255)

                                              aCCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGAtt                                                                                      <  1:327348/140‑1 (MQ=255)

                                              aCCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGAtt                                                                                      <  1:74100/140‑1 (MQ=255)

                                                cGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTa                                                                                    <  1:1336640/140‑1 (MQ=255)

                                                cGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTa                                                                                    >  1:382722/1‑140 (MQ=255)

                                                  ttCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACg                                                                                  >  1:451320/1‑140 (MQ=255)

                                                   tCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGc                                                                                 <  2:1523077/140‑1 (MQ=255)

                                                    ccTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCa                                                                                <  2:1061504/140‑1 (MQ=255)

                                                             cGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTAc                                                                       >  2:1383630/1‑140 (MQ=255)

                                                                  cAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGAt                                                                  <  2:2113316/140‑1 (MQ=255)

                                                                    aTGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGa                                                                <  2:663630/140‑1 (MQ=255)

                                                                     tGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGaa                                                               <  2:1592401/140‑1 (MQ=255)

                                                                     tGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGaa                                                               <  1:1383630/140‑1 (MQ=255)

                                                                       gAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGaaaa                                                             <  1:1747627/140‑1 (MQ=255)

                                                                         gTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACa                                                           <  2:904999/140‑1 (MQ=255)

                                                                         gTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACa                                                           <  2:402063/140‑1 (MQ=255)

                                                                         gTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACa                                                           <  2:2429794/140‑1 (MQ=255)

                                                                          tGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAg                                                          >  2:737156/1‑140 (MQ=255)

                                                                          tGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAg                                                          <  2:451320/140‑1 (MQ=255)

                                                                            gCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGt                                                        <  2:64804/140‑1 (MQ=255)

                                                                                      tacCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACa                                                           <  2:292072/127‑1 (MQ=255)

                                                                                      tacCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACa                                                           >  1:292072/1‑127 (MQ=255)

                                                                                       acCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTCATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTg                                             >  2:332884/1‑140 (MQ=255)

                                                                                        ccTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGc                                            >  2:530395/1‑140 (MQ=255)

                                                                                            tCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGcc                                        >  2:667052/1‑140 (MQ=255)

                                                                                            tCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGcc                                        >  1:1149201/1‑140 (MQ=255)

                                                                                            tCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGcc                                        >  2:163589/1‑140 (MQ=255)

                                                                                            tCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGcc                                        >  2:499487/1‑140 (MQ=255)

                                                                                            tCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGcc                                        >  1:2252507/1‑140 (MQ=255)

                                                                                            tCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGcc                                        >  1:417723/1‑140 (MQ=255)

                                                                                               aTTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGccacc                                     <  2:970845/140‑1 (MQ=255)

                                                                                                   aCAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAg                                   <  1:1124961/138‑1 (MQ=255)

                                                                                                   aCAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAg                                   >  2:1124961/1‑138 (MQ=255)

                                                                                                   aCAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCg                                 <  2:382722/140‑1 (MQ=255)

                                                                                                   aCAAAGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCg                                 <  2:51993/140‑1 (MQ=255)

                                                                                                      aaGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCt                              >  1:1848866/1‑140 (MQ=255)

                                                                                                      aaGATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCt                              <  2:2199924/140‑1 (MQ=255)

                                                                                                        gATCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGc                            >  2:2317739/1‑140 (MQ=255)

                                                                                                          tCACAACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCt                          >  2:1858614/1‑140 (MQ=255)

                                                                                                           cacaACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGTCACCAGCGGCTGCCTa                         <  1:1668890/140‑1 (MQ=255)

                                                                                                           cacaACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTa                         >  2:1377992/1‑140 (MQ=255)

                                                                                                            acaACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTAt                        >  1:1072034/1‑140 (MQ=255)

                                                                                                            acaACCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTAt                        <  1:1868787/140‑1 (MQ=255)

                                                                                                              aaCCCGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTg                      <  1:530395/140‑1 (MQ=255)

                                                                                                                cccGGATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGaa                    <  1:2195576/140‑1 (MQ=255)

                                                                                                                   ggATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAacac                 >  2:649015/1‑140 (MQ=255)

                                                                                                                   ggATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAacac                 >  1:1947066/1‑140 (MQ=255)

                                                                                                                   ggATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAacac                 >  1:807674/1‑140 (MQ=255)

                                                                                                                   ggATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAacac                 >  2:1047158/1‑140 (MQ=255)

                                                                                                                   ggATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAacac                 >  2:265914/1‑140 (MQ=255)

                                                                                                                   ggATGAACGCCGCTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAacac                 >  1:1065059/1‑140 (MQ=255)

                                                                                                                          cgccgcTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTc          >  2:808322/1‑140 (MQ=255)

                                                                                                                           gccgcTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCg         <  1:667052/140‑1 (MQ=255)

                                                                                                                           gccgcTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCg         <  2:1587564/140‑1 (MQ=255)

                                                                                                                              gcTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGa      >  2:924509/1‑140 (MQ=255)

                                                                                                                               cTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGAt     >  1:1956557/1‑140 (MQ=255)

                                                                                                                               cTATTACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGGATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGAt     >  1:1050080/1‑140 (MQ=255)

                                                                                                                                  ttACGGTCGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGATGCa  <  2:1550355/140‑1 (MQ=255)

TCATCGATTACGCCGAAATTTCGCAAGGGCTGCACCCGTGGCTGGCACCGTTCCTGATGTTCGTGCCAATGGAGTGGCTCTGCTACTACCTGTCTATTTACAAAGATCACAACCCGGATGAACGCCGCTATTACGGTGGTCTGGTGGAATATTAATCCCTCTCCCGGCCCGGCAACGGGCCGGATTTACGCAAGGAGTTACCCGATGAAAACAGGTATGTTTACCTGCGGCCACCAGCGGCTGCCTATTGAACACGCATTTCGTGATGCA  >  NC_000913/3502136‑3502405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A