Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A34 F60 I1 R1 11 140.5 4770272 99.3% 4736880 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,874,376 T→G A33A (GCA→GCC)  dgoK ← 2‑dehydro‑3‑deoxygalactonokinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,874,3760TG100.0% 495.7 / NA 130A33A (GCA→GCC) dgoK2‑dehydro‑3‑deoxygalactonokinase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (69/61);  total (69/61)

Only 100 of 132 total aligned reads displayed.

ATACGGTGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCTGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCTGGCGATC  >  NC_000913/3874241‑3874510
                                                                                                                                       |                                                                                                                                      
aTACGGTGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCtt                                                                                                                                    >  1:254582/1‑140 (MQ=255)
aTACGGTGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCtt                                                                                                                                    >  1:1257116/1‑140 (MQ=255)
 tACGGTGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTc                                                                                                                                   >  2:131763/1‑140 (MQ=255)
   cGGTGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTg                                                                                                                                 <  1:1079728/140‑1 (MQ=255)
   cGGTGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTg                                                                                                                                 <  1:1638918/140‑1 (MQ=255)
   cGGTGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTg                                                                                                                                 <  2:184117/140‑1 (MQ=255)
    ggTGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGa                                                                                                                                >  2:845196/1‑140 (MQ=255)
    ggTGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGa                                                                                                                                >  1:1315628/1‑140 (MQ=255)
     gTGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGAt                                                                                                                               <  1:468726/140‑1 (MQ=255)
      tGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGAtt                                                                                                                              >  2:891997/1‑140 (MQ=255)
      tGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGAtt                                                                                                                              >  1:472361/1‑140 (MQ=255)
      tGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGAtt                                                                                                                              >  1:610714/1‑140 (MQ=255)
      tGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGAtt                                                                                                                              >  2:1059853/1‑140 (MQ=255)
      tGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGAtt                                                                                                                              >  2:1615429/1‑140 (MQ=255)
      tGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGAtt                                                                                                                              >  1:1386923/1‑140 (MQ=255)
      tGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGAtt                                                                                                                              >  1:131766/1‑140 (MQ=255)
      tGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGAtt                                                                                                                              >  2:307023/1‑140 (MQ=255)
      tGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGAtt                                                                                                                              >  2:701150/1‑140 (MQ=255)
        cAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGc                                                                                                                            >  2:1728948/1‑140 (MQ=255)
        cAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGc                                                                                                                            >  1:2040922/1‑140 (MQ=255)
          aCTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCt                                                                                                                          <  2:214081/140‑1 (MQ=255)
          aCTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCt                                                                                                                          <  1:1059853/140‑1 (MQ=255)
          aCTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCt                                                                                                                          <  1:2151009/140‑1 (MQ=255)
            tttCCAGCAGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTAACGCCGGCTTCTGATTGCCTGc                                                                                                                        <  1:1910920/140‑1 (MQ=255)
                    cGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAgg                                                                                                                <  1:2249310/140‑1 (MQ=255)
                     gACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGc                                                                                                               <  2:1315628/140‑1 (MQ=255)
                      aCGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCa                                                                                                              <  1:1636834/140‑1 (MQ=255)
                           gctgcCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGt                                                                                                         <  1:560483/140‑1 (MQ=255)
                               ccAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGcc                                                                                                     <  2:610714/140‑1 (MQ=255)
                                 aaCCATTCCTGCCATTACAACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCt                                                                                                   >  2:105876/1‑140 (MQ=255)
                                  aCCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTg                                                                                                  >  2:643988/1‑140 (MQ=255)
                                      ttCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATaa                                                                                              >  1:190569/1‑140 (MQ=255)
                                         cTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGc                                                                                           >  1:2246071/1‑140 (MQ=255)
                                         cTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGc                                                                                           <  2:616089/140‑1 (MQ=255)
                                            ccATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAg                                                                                        >  1:2059110/1‑140 (MQ=255)
                                              aTTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGcc                                                                                                     <  2:1985594/125‑1 (MQ=255)
                                              aTTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGcc                                                                                                     >  1:1985594/1‑125 (MQ=255)
                                               ttACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGgcg                                                                                     <  1:845196/140‑1 (MQ=255)
                                               ttACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGgcg                                                                                     <  2:1237759/140‑1 (MQ=255)
                                                tACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTAAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGgcgc                                                                                    >  1:1402792/1‑140 (MQ=255)
                                                 aCCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGgcgcg                                                                                   >  1:1935891/1‑140 (MQ=255)
                                                 aCCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGgcgcg                                                                                   >  2:1293767/1‑140 (MQ=255)
                                                 aCCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGgcgcg                                                                                   >  2:1675299/1‑140 (MQ=255)
                                                 aCCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGgcgcg                                                                                   <  1:643988/140‑1 (MQ=255)
                                                 aCCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGgcgcg                                                                                   <  1:131763/140‑1 (MQ=255)
                                                 aCCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGgcgcg                                                                                   >  1:2235632/1‑140 (MQ=255)
                                                     cTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGa                                                                               >  2:3452/1‑140 (MQ=255)
                                                      tGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGAt                                                                              >  1:339575/1‑140 (MQ=255)
                                                       ggCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGAtt                                                                             >  1:1699454/1‑140 (MQ=255)
                                                        gCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTg                                                                            >  2:2209885/1‑140 (MQ=255)
                                                        gCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTg                                                                            >  1:988551/1‑140 (MQ=255)
                                                          gTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTC‑GGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTc                                                                         <  1:1815288/140‑1 (MQ=255)
                                                           ttttCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTc                                                                         <  1:2175027/140‑1 (MQ=255)
                                                                 ctTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATccc                                                                   <  2:1257116/140‑1 (MQ=255)
                                                                  ttCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATcccc                                                                  >  2:2053077/1‑140 (MQ=255)
                                                                     aCGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGt                                                               <  1:673544/140‑1 (MQ=255)
                                                                          aGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAAtt                                                          <  1:105876/140‑1 (MQ=255)
                                                                           gtcggtcgTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTg                                                         <  2:1699454/140‑1 (MQ=255)
                                                                            tcggtcgTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGc                                                        >  2:1533305/1‑140 (MQ=255)
                                                                            tcggtcgTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGCGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGc                                                        >  1:819414/1‑140 (MQ=255)
                                                                              ggtcgTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGa                                                      >  1:90958/1‑140 (MQ=255)
                                                                                 cgTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGt                                                   >  2:535641/1‑140 (MQ=255)
                                                                                  gTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTa                                                  <  2:407183/140‑1 (MQ=255)
                                                                                      cTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGa                                              >  2:2046496/1‑140 (MQ=255)
                                                                                       ttCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAg                                             <  2:2384597/140‑1 (MQ=255)
                                                                                       ttCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAg                                             <  2:2040922/140‑1 (MQ=255)
                                                                                       ttCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAg                                             <  2:190569/140‑1 (MQ=255)
                                                                                       ttCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAg                                             <  1:638273/140‑1 (MQ=255)
                                                                                       ttCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAg                                             <  2:339575/140‑1 (MQ=255)
                                                                                       ttCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAg                                             <  2:1386923/140‑1 (MQ=255)
                                                                                       ttCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAg                                             <  2:611361/140‑1 (MQ=255)
                                                                                         cTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCt                                           >  1:1445814/1‑140 (MQ=255)
                                                                                          tGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTg                                          >  1:546458/1‑140 (MQ=255)
                                                                                          tGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTg                                          >  1:2142676/1‑140 (MQ=255)
                                                                                            cTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTc                                        <  1:1530933/140‑1 (MQ=255)
                                                                                            cTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTc                                        <  1:752288/140‑1 (MQ=255)
                                                                                              aaCACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCAt                                      >  2:10740/1‑140 (MQ=255)
                                                                                               acacCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCAtg                                     >  1:181758/1‑140 (MQ=255)
                                                                                                   cGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGGTAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGAt                                 <  1:1524825/140‑1 (MQ=255)
                                                                                                   cGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGAt                                 <  2:2336996/140‑1 (MQ=255)
                                                                                                   cGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGAt                                 <  1:1207161/140‑1 (MQ=255)
                                                                                                   cGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGAt                                 <  2:472361/140‑1 (MQ=255)
                                                                                                    gCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGAtt                                >  2:2271941/1‑140 (MQ=255)
                                                                                                    gCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGAtt                                >  2:1508387/1‑140 (MQ=255)
                                                                                                          ggAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCTAGCTGTCATGTGATTTCCttt                          >  1:465744/1‑140 (MQ=255)
                                                                                                          ggAGATTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCttt                          <  1:891997/140‑1 (MQ=255)
                                                                                                           gagaTTTTCCGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTa                         >  2:668565/1‑140 (MQ=255)
                                                                                                                    cGTTCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCgtg                <  2:1446073/140‑1 (MQ=255)
                                                                                                                      ttCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTc              >  2:872352/1‑140 (MQ=255)
                                                                                                                       tCAGGCGCGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCg             <  1:1835527/140‑1 (MQ=255)
                                                                                                                           gcgcGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCt         <  2:181758/140‑1 (MQ=255)
                                                                                                                           gcgcGTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCt         <  1:892223/140‑1 (MQ=255)
                                                                                                                            cgcgTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCTg        <  2:2235632/140‑1 (MQ=255)
                                                                                                                             gcgTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCTgg       <  1:3452/140‑1 (MQ=255)
                                                                                                                              cgTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCTGGc      >  2:188673/1‑140 (MQ=255)
                                                                                                                               gTGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCTGGCg     <  2:131766/140‑1 (MQ=255)
                                                                                                                                tGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCTGGCGa    >  1:2105646/1‑140 (MQ=255)
                                                                                                                                tGACGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCTGGCGa    >  1:1137241/1‑140 (MQ=255)
                                                                                                                                  aCGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCTGGCGATc  <  1:10740/140‑1 (MQ=255)
                                                                                                                                  aCGCCGGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCTGGCGATc  <  1:1533305/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                      
ATACGGTGCAACTTTCCAGCCGACGTTGCTGCCAACCATTCCTGCCATTACCACTGGCGTTTTCTCTTCACGCCAGTCGGTCGTGACTTCTGCTAACACCGCAGCCGGAGATTTTCCGTTCAGGCGCGTGACGCCTGCTTCTGATTGCCTGCTCTCCAGGCAGTGGTCGCCCTGATAAAGCCAGGCGCGCAGATTGGTCGATCCCCAGTCAATTGCGATGTAGCGAGCTGTCATGTGATTTCCTTTAACCTTCGTGTCGAGCTGGCGATC  >  NC_000913/3874241‑3874510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A