Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F60 I1 R1
|
14 |
101.6 |
3468360 |
98.9% |
3430208 |
139.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
2,878,035 |
Δ184 bp |
intergenic (+417/+351) |
iap → / ← cas2 |
alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
2878035 |
2878218 |
184 |
88 [0] |
[0] 88 |
iap/cas2 |
alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 2878034 | 0 (0.000) | 68 (0.850) |
39/218 |
0.6 |
100% |
intergenic (+416/+535) |
iap/cas2 |
alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2 |
| ? | NC_000913 |
2878219 = |
0 (0.000) | intergenic (+601/+350) |
iap/cas2 |
alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2 |
GATK/CNVnator alignment
N/A
