Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F60 I1 R1 12 151.3 5185766 98.9% 5128722 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,936,204 G→A A207A (GCG→GCA)  fucI → L‑fucose isomerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,936,2040GA100.0% 364.7 / NA 104A207A (GCG→GCA) fucIL‑fucose isomerase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (47/57);  total (47/57)

Only 100 of 104 total aligned reads displayed.

TTTGCCCGCGCCGGTTTGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCGGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCAACGTAATG  >  NC_000913/2936067‑2936340
                                                                                                                                         |                                                                                                                                        
tttGCCCGCGCCGGTTTGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTCGAATCCTGGCTGGGAATGAAAGTCCAGGCAGt                                                                                                                                        >  1:1872358/1‑140 (MQ=255)
 ttGCCCGCGGCGGTTTGGCCGTAGCCAGCCTGAAAGGTAAAAGCTATCTGTCGCTGGGAGGCGTTTCGATGGGTATCGGCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTg                                                                                                                                       <  2:702661/140‑1 (MQ=255)
   gCCCGCGCCGGTTTGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGa                                                                                                                                     <  1:1735466/140‑1 (MQ=255)
   gCCCGCGCCGGTTTGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGa                                                                                                                                     <  2:1641637/140‑1 (MQ=255)
     ccGCGCCGGTTTGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGata                                                                                                                                   <  2:281121/140‑1 (MQ=255)
        cgcCGGTTTGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGa                                                                                                                                <  2:118729/140‑1 (MQ=255)
           cGGTTTGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCg                                                                                                                             <  2:106885/140‑1 (MQ=255)
            ggTTTGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGa                                                                                                                            >  1:1479837/1‑140 (MQ=255)
              tttGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAAc                                                                                                                          >  1:2142034/1‑140 (MQ=255)
                tGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTg                                                                                                                        <  1:63945/140‑1 (MQ=255)
                tGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTg                                                                                                                        <  1:1646240/140‑1 (MQ=255)
                  gCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCg                                                                                                                      <  2:2073678/140‑1 (MQ=255)
                     gTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCg                                                                                                                   <  2:1302949/140‑1 (MQ=255)
                       cGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGcc                                                                                                                 >  1:1481104/1‑140 (MQ=255)
                          cAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTa                                                                                                              <  1:1596554/140‑1 (MQ=255)
                          cAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTa                                                                                                              <  2:1154212/140‑1 (MQ=255)
                            gCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATc                                                                                                            <  1:2230160/140‑1 (MQ=255)
                               tGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGAt                                                                                                         <  1:2242534/140‑1 (MQ=255)
                               tGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGAt                                                                                                         <  1:948641/140‑1 (MQ=255)
                               tGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGAt                                                                                                         <  2:1060167/140‑1 (MQ=255)
                               tGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGAt                                                                                                         <  1:1848287/140‑1 (MQ=255)
                                gAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATc                                                                                                        >  1:1633540/1‑140 (MQ=255)
                                   aGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCaga                                                                                                     <  1:2456915/140‑1 (MQ=255)
                                    ggTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCagaa                                                                                                    >  1:2462578/1‑140 (MQ=255)
                                      tAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCagaaga                                                                                                  >  1:1772894/1‑140 (MQ=255)
                                        aaaGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGAtt                                                                                                >  1:430463/1‑140 (MQ=255)
                                             tATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTacga                                                                                           <  2:594557/140‑1 (MQ=255)
                                               tCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTacgacg                                                                                         >  1:2077831/1‑140 (MQ=255)
                                                cTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTAcgacga                                                                                        >  1:1605810/1‑140 (MQ=255)
                                                cTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTAcgacga                                                                                        <  2:1384174/140‑1 (MQ=255)
                                                cTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTAcgacga                                                                                        >  1:659701/1‑140 (MQ=255)
                                                 tGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGaa                                                                                       <  2:729670/140‑1 (MQ=255)
                                                    cGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGcc                                                                                    >  2:1626559/1‑140 (MQ=255)
                                                       tGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGaa                                                                                 <  2:2324138/140‑1 (MQ=255)
                                                       tGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGaa                                                                                 <  1:2194377/140‑1 (MQ=255)
                                                         ggcggcGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAAtt                                                                               >  2:1751964/1‑140 (MQ=255)
                                                         ggcggcGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAAtt                                                                               >  2:582718/1‑140 (MQ=255)
                                                             gcgTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGaa                                                                           >  2:770965/1‑140 (MQ=255)
                                                             gcatttCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGaa                                                                           >  2:35227/4‑140 (MQ=255)
                                                              cgTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGaaa                                                                          <  1:1626559/140‑1 (MQ=255)
                                                              cgTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGaaa                                                                          <  1:2475642/140‑1 (MQ=255)
                                                                tttCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATg                                                                        >  1:2149560/1‑140 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  2:10874/140‑1 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  1:1463484/140‑1 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  1:1374640/140‑1 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  2:1903726/140‑1 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  2:1111363/140‑1 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  2:1142849/140‑1 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  1:169920/140‑1 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  2:612317/140‑1 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  1:1672898/140‑1 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  2:397537/140‑1 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCATATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  2:624537/140‑1 (MQ=255)
                                                                   cGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTCGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCa                                                                     <  2:1872358/140‑1 (MQ=255)
                                                                         gTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGcc                                                               <  1:2586097/140‑1 (MQ=255)
                                                                           aTCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTg                                                             >  1:1514819/1‑140 (MQ=255)
                                                                              gCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGc                                                          <  2:430463/140‑1 (MQ=255)
                                                                                  gTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGAt                                                      >  2:1789420/1‑140 (MQ=255)
                                                                                   ttCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATa                                                     >  2:2494300/1‑140 (MQ=255)
                                                                                          gttgATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACtt                                              >  2:2209247/1‑140 (MQ=255)
                                                                                             gATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCg                                           >  2:1509326/1‑140 (MQ=255)
                                                                                             gATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCg                                           >  2:949670/1‑140 (MQ=255)
                                                                                               tCACAACTTCTTTGAATCCTAGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCt                                         <  2:1605810/140‑1 (MQ=255)
                                                                                                cacaACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTa                                        >  1:1196969/1‑140 (MQ=255)
                                                                                                 acaACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTAt                                       >  2:338888/1‑140 (MQ=255)
                                                                                                    aCTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGc                                    <  2:1374156/140‑1 (MQ=255)
                                                                                                     cttcttTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCg                                   >  2:1396915/1‑140 (MQ=255)
                                                                                                     cttcttTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCg                                   <  1:1151703/140‑1 (MQ=255)
                                                                                                     cttcttTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCg                                   <  1:1742766/140‑1 (MQ=255)
                                                                                                     cttcttTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCg                                   >  1:227604/1‑140 (MQ=255)
                                                                                                     cttcttTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCg                                   >  1:333964/1‑140 (MQ=255)
                                                                                                        cttTGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAg                                >  2:350742/1‑140 (MQ=255)
                                                                                                          ttGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACTGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGAt                              <  2:1633540/140‑1 (MQ=255)
                                                                                                          ttGAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGAt                              >  1:2346834/1‑140 (MQ=255)
                                                                                                            gAATCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGa                            <  2:2142034/140‑1 (MQ=255)
                                                                                                              aTCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGaaa                          <  1:2310451/140‑1 (MQ=255)
                                                                                                               tCCTGGCTGGGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGaaaa                         >  1:412573/1‑140 (MQ=255)
                                                                                                                  tggctggGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATaa                      <  1:770965/140‑1 (MQ=255)
                                                                                                                  tggctggGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATaa                      >  2:144946/1‑140 (MQ=255)
                                                                                                                   ggctggGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATaac                     >  2:665696/1‑140 (MQ=255)
                                                                                                                   ggctggGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATaac                     >  1:1190082/1‑140 (MQ=255)
                                                                                                                   ggctggGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATaac                     >  2:912669/1‑140 (MQ=255)
                                                                                                                   ggctggGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATaac                     >  2:1233633/1‑140 (MQ=255)
                                                                                                                    gctggGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATaaca                    <  1:2494300/140‑1 (MQ=255)
                                                                                                                     ctggGAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATaacaa                   <  1:1114035/140‑1 (MQ=255)
                                                                                                                       gggAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATaacaaac                 <  1:35227/140‑1 (MQ=255)
                                                                                                                         gAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAg               >  2:1064899/1‑140 (MQ=255)
                                                                                                                         gAATGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAg               >  1:2485955/1‑140 (MQ=255)
                                                                                                                         gAATGAAAGTCCAGGCAATGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAg               >  1:2007813/1‑140 (MQ=255)
                                                                                                                          aaTGAAAGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGt              >  1:1171933/1‑140 (MQ=255)
                                                                                                                              aaaGTCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCa          >  1:2208244/1‑140 (MQ=255)
                                                                                                                                  tCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCAACGt      >  2:30515/1‑140 (MQ=255)
                                                                                                                                  tCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCAACGt      >  2:1732736/1‑140 (MQ=255)
                                                                                                                                  tCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCAACGt      >  1:1674074/1‑140 (MQ=255)
                                                                                                                                  tCCAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCAACGt      >  1:107007/1‑140 (MQ=255)
                                                                                                                                   ccAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCAACGTa     <  2:412573/140‑1 (MQ=255)
                                                                                                                                   ccAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCAACGTa     <  1:461127/140‑1 (MQ=255)
                                                                                                                                    cAGGCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCAACGTaa    >  2:1031825/1‑140 (MQ=255)
                                                                                                                                      ggCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCAACGTAATg  <  2:2077831/140‑1 (MQ=255)
                                                                                                                                      ggCAGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCAACGTAATg  <  2:1481104/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TTTGCCCGCGCCGGTTTGGCCGTCGCCAGCATGAAAGGTAAAAGCTATCTGTCGCTGGGCGGCGTTTCGATGGGTATCGCCGGTTCCATTGTTGATCACAACTTCTTTGAATCCTGGCTGGGAATGAAAGTCCAGGCGGTGGATATGACCGAACTGCGTCGCCGTATCGATCAGAAGATTTACGACGAAGCCGAATTGGAAATGGCACTGGCCTGGGCTGATAAAAACTTCCGCTATGGCGAAGATGAAAATAACAAACAGTATCAACGTAATG  >  NC_000913/2936067‑2936340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A