Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F60 I1 R1	13	89.5	3018190	98.6%	2975935	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	1,209,184	IS5 (+) +4 bp	pseudogene (469‑472/537 nt)	stfE ←	e14 prophage; putative side tail fiber protein fragment

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 275149	NA (NA)	79 (0.890)	49/278	0.5	100%	noncoding (1/1195 nt)	IS5	repeat region
*	?	NC_000913	= 1209187	0 (0.000)	79 (0.890)	49/278	0.5	100%	pseudogene (469/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment
*	?	NC_000913	1209184 =	0 (0.000)	65 (0.740)	41/276	0.9	100%	pseudogene (472/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment
*	?	NC_000913	2101749 =	NA (NA)	65 (0.740)	41/276	0.9	100%	noncoding (1195/1195 nt)	IS5	repeat region

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/275011‑275149

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATGTTACCGTTTATAACTACG  <  NC_000913/1209187‑1209050

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                           <  2:292032/140‑1

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                           <  2:372749/140‑1

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                           <  1:805305/140‑1

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                           <  2:386041/140‑1

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT                                                                                                                                           <  1:355127/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                         <  2:954413/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                         <  1:1041979/140‑1

  AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA                                                                                                                                         <  2:563791/140‑1

    TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGG                                                                                                                                       >  2:532994/1‑140

     CTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGT                                                                                                                                      <  2:344901/140‑1

     CTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGT                                                                                                                                      <  2:626060/140‑1

          TTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGC                                                                                                                                 <  2:283737/140‑1

          TTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGC                                                                                                                                 <  1:1393700/140‑1

             TGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGC                                                                                                                              >  1:508054/1‑140

                    ACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAA                                                                                                                       >  2:226523/1‑140

                    ACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAA                                                                                                                       <  2:323150/140‑1

                       GCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACG                                                                                                                    <  1:1074785/140‑1

                        CGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGCTCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGC                                                                                                                   <  2:360060/140‑1

                         GCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCG                                                                                                                  >  2:626097/1‑140

                          CTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGT                                                                                                                 >  1:604084/1‑140

                          CTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGT                                                                                                                 <  1:990505/140‑1

                          CTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGT                                                                                                                 <  1:660499/140‑1

                                 CTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTA                                                                                                          <  2:604084/140‑1

                                 CTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTA                                                                                                          >  1:670958/1‑140

                                         ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCA                                                                                                  <  1:1474923/140‑1

                                         ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCA                                                                                                  <  2:670958/140‑1

                                           TGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATT                                                                                                <  1:1094276/140‑1

                                                GCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACT                                                                                           >  1:27937/1‑140

                                                GCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACT                                                                                           <  2:508054/140‑1

                                                       TAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGT                                                                                    >  2:1150814/1‑140

                                                            TGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGG                                                                               <  1:1150814/140‑1

                                                              ATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCA                                                                             <  2:403548/140‑1

                                                              ATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCA                                                                             <  2:27937/140‑1

                                                                GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGC                                                                           >  2:713284/1‑140

                                                                GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGC                                                                           <  2:72440/140‑1

                                                                GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGC                                                                           >  2:75264/1‑140

                                                                 ACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCC                                                                          >  1:633854/1‑140

                                                                   TCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTG                                                                        <  1:626097/140‑1

                                                                   TCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTG                                                                        <  2:1092959/140‑1

                                                                     ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGAT                                                                      >  1:632733/1‑140

                                                                        ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCA                                                                   <  2:395864/140‑1

                                                                            ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAA                                                               >  1:1369238/1‑140

                                                                             CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAG                                                              >  1:1164856/1‑140

                                                                             CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAG                                                              >  2:1185990/1‑140

                                                                             CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAG                                                              <  2:632733/140‑1

                                                                             CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAG                                                              <  1:75264/140‑1

                                                                                 GTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAAT                                                          >  2:107846/1‑140

                                                                                 GTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAAT                                                          >  1:1056009/1‑140

                                                                                  TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATA                                                         >  1:1354262/1‑140

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAA                                                    >  2:778755/1‑140

                                                                                       TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAA                                                    >  1:126260/1‑140

                                                                                        GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAAT                                                   <  1:713284/140‑1

                                                                                            CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTG                                               >  2:918612/1‑140

                                                                                            CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTG                                               >  1:147206/1‑140

                                                                                            CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTG                                               >  2:919335/1‑140

                                                                                            CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTG                                               >  2:922757/1‑140

                                                                                                   ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTAT                                        <  2:1056009/140‑1

                                                                                                    CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATT                                       <  2:147206/140‑1

                                                                                                    CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATT                                       >  2:860587/1‑140

                                                                                                          TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACA                                 >  1:539653/1‑140

                                                                                                           GATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAA                                >  1:344187/1‑140

                                                                                                            ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAA                               <  1:1272862/140‑1

                                                                                                                CATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCA                           <  2:1074232/140‑1

                                                                                                                CATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCA                           <  2:1164856/140‑1

                                                                                                                 ATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAG                          >  1:739538/1‑140

                                                                                                                 ATATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAG                          <  2:1354262/140‑1

                                                                                                                  TATCAGGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGG                         <  1:922757/140‑1

                                                                                                                       GGGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATG                    >  1:1274544/1‑140

                                                                                                                        GGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATGT                   >  2:938908/1‑140

                                                                                                                        GGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATGT                   >  2:1068384/1‑140

                                                                                                                        GGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATGT                   >  1:1271420/1‑140

                                                                                                                        GGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATGT                   >  2:290150/1‑140

                                                                                                                        GGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATGT                   >  1:1083316/1‑140

                                                                                                                        GGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACA                                 >  2:1389276/1‑126

                                                                                                                        GGACTTGTTCGCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACA                                 <  1:1389276/126‑1

                                                                                                                                  GCACCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATGTTACCGTTTAT         >  2:59215/1‑140

                                                                                                                                     CCTTCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATGTTACCGTTTATAAC      <  2:1271420/140‑1

                                                                                                                                        TCCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATGTTACCGTTTATAACTAC   >  1:686569/1‑140

                                                                                                                                         CCTTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATGTTACCGTTTATAACTACG  <  1:32117/140‑1

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/275011‑275149

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGGTGCCGCAGCCTCAGAAACGCGTCCGCGTAATATTGCATTTAACTATATCGTGAGGGCAGCCTGATGCATAAAGCAATATTAAATAGTGACCTTATTGCAACAAAGGCAGGGGATGTTACCGTTTATAACTACG  <  NC_000913/1209187‑1209050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A