Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A38 F60 I1 R1
|
17 |
120.6 |
4079220 |
98.9% |
4034348 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
2,005,750 |
Δ40 bp |
coding (38‑77/366 nt) |
fliT → |
flagellar biosynthesis protein FliT |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
2005750 |
2005789 |
40 |
139 [0] |
[0] 142 |
fliT |
flagellar biosynthesis protein FliT |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 2005749 | 0 (0.000) | 123 (1.110) |
74/256 |
0.1 |
100% |
coding (37/366 nt) |
fliT |
flagellar biosynthesis protein FliT |
| ? | NC_000913 |
2005790 = |
0 (0.000) | coding (78/366 nt) |
fliT |
flagellar biosynthesis protein FliT |
GATK/CNVnator alignment
N/A
