Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A37 F60 I1 R1 11 134.4 4525100 98.8% 4470798 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,264,003 G→A L339L (CTG→TTG)  tdcC ← threonine/serine:H(+) symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,264,0030GA100.0% 592.9 / NA 169L339L (CTG→TTG) tdcCthreonine/serine:H(+) symporter
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (91/78);  total (91/78)

Only 100 of 170 total aligned reads displayed.

GTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGC  >  NC_000913/3263866‑3264139
                                                                                                                                         |                                                                                                                                        
gTTCGGGTTGGCGTAGGCAACACCCCAGGTGGAGCCCATGATGAAGATCATGGTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAGCCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACg                                                                                                                                        <  2:108732/140‑1 (MQ=255)
 ttCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGt                                                                                                                                       >  2:914195/1‑140 (MQ=255)
 ttCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGt                                                                                                                                       >  2:2176448/1‑140 (MQ=255)
 ttCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGt                                                                                                                                       >  1:1552887/1‑140 (MQ=255)
 ttCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGt                                                                                                                                       >  2:1473111/1‑140 (MQ=255)
       ttGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAg                                                                                                                                 >  1:610077/1‑140 (MQ=255)
         ggCGTAGGCAACAACCCAGGTGGAGCCCATGATTAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGAt                                                                                                                               >  2:399578/1‑140 (MQ=255)
         ggCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGAt                                                                                                                               <  2:1668902/140‑1 (MQ=255)
         ggCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGAt                                                                                                                               >  2:136361/1‑140 (MQ=255)
                    caacCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCgaag                                                                                                                    >  2:309131/1‑140 (MQ=255)
                          aGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGAt                                                                                                              <  1:1950352/140‑1 (MQ=255)
                                aGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAg                                                                                                        >  2:1762187/1‑140 (MQ=255)
                                 gCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGa                                                                                                       >  1:507521/1‑140 (MQ=255)
                                 gCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGa                                                                                                       >  1:1869628/1‑140 (MQ=255)
                                 gCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGa                                                                                                       >  2:1118727/1‑140 (MQ=255)
                                  cccATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGAt                                                                                                      >  1:1602331/1‑140 (MQ=255)
                                    cATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAg                                                                                                    >  1:2068414/1‑140 (MQ=255)
                                     atgatgAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGc                                                                                                   >  2:1913341/1‑140 (MQ=255)
                                     atgatgAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGc                                                                                                   >  1:1174601/1‑140 (MQ=255)
                                       gatgaAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCa                                                                                                 <  1:914195/140‑1 (MQ=255)
                                            aGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGt                                                                                            >  1:1470119/1‑140 (MQ=255)
                                               tCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAATATTTGAAGATAGCCACGAGTGCg                                                                                         <  1:985759/140‑1 (MQ=255)
                                               tCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCg                                                                                         >  2:1190009/1‑140 (MQ=255)
                                               tCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCg                                                                                         <  1:1086357/140‑1 (MQ=255)
                                                 aTGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCgat                                                                                       >  1:1813431/1‑140 (MQ=255)
                                                 aTGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCgat                                                                                       >  2:212593/1‑140 (MQ=255)
                                                  tGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCgatg                                                                                      >  2:1778698/1‑140 (MQ=255)
                                                       aTAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGa                                                                                 >  2:2082701/1‑140 (MQ=255)
                                                         aGTGTTCAGTTTACCCAGCGACACTTTAGTTTTTTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAg                                                                               <  1:1794008/140‑1 (MQ=255)
                                                         aGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAg                                                                               <  2:1646846/140‑1 (MQ=255)
                                                         aGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAg                                                                               <  2:625380/140‑1 (MQ=255)
                                                         aGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAg                                                                               <  2:60828/140‑1 (MQ=255)
                                                         aGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAg                                                                               <  2:581772/140‑1 (MQ=255)
                                                         aGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAg                                                                               <  1:399578/140‑1 (MQ=255)
                                                          gtgtTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGc                                                                              >  2:1628329/1‑140 (MQ=255)
                                                             ttCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGc                                                                           >  2:368222/1‑140 (MQ=255)
                                                             ttCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGc                                                                           >  1:121562/1‑140 (MQ=255)
                                                             ttCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGc                                                                           >  1:1119812/1‑140 (MQ=255)
                                                             ttCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGc                                                                           <  2:980297/140‑1 (MQ=255)
                                                              tCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCa                                                                          >  2:1039337/1‑140 (MQ=255)
                                                              tCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCa                                                                          <  2:1602331/140‑1 (MQ=255)
                                                              tCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCa                                                                          >  2:841741/1‑140 (MQ=255)
                                                                 gTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCatat                                                                       <  2:1813431/140‑1 (MQ=255)
                                                                     aCCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCa                                                                   >  1:1487116/1‑140 (MQ=255)
                                                                       ccAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAgt                                                                 >  1:747195/1‑140 (MQ=255)
                                                                       ccAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAgt                                                                 >  2:772852/1‑140 (MQ=255)
                                                                        cAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAgtg                                                                <  1:1268342/140‑1 (MQ=255)
                                                                        cAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAgtg                                                                <  1:243881/140‑1 (MQ=255)
                                                                          gCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAg                                                                               <  1:1845020/123‑1 (MQ=255)
                                                                          gCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAg                                                                               >  2:1845020/1‑123 (MQ=255)
                                                                            gACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAAt                                                            >  2:1677773/1‑140 (MQ=255)
                                                                               acTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATcgc                                                         <  2:507521/140‑1 (MQ=255)
                                                                                cTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATcgcg                                                        >  2:1173346/1‑140 (MQ=255)
                                                                                cTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATcgcg                                                        <  2:376972/140‑1 (MQ=255)
                                                                                cTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATcgcg                                                        <  1:1979724/140‑1 (MQ=255)
                                                                                    aGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACg                                                    >  2:1153348/1‑140 (MQ=255)
                                                                                     gTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACgt                                                   <  1:2204221/140‑1 (MQ=255)
                                                                                     gTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACgt                                                   >  2:45986/1‑140 (MQ=255)
                                                                                     gTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGACATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACgt                                                   <  2:121562/140‑1 (MQ=255)
                                                                                      ttttGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACgtt                                                  >  2:863838/1‑140 (MQ=255)
                                                                                           tCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGtttt                                             >  1:1270129/1‑140 (MQ=255)
                                                                                           tCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGtttt                                             >  2:1513461/1‑140 (MQ=255)
                                                                                           tCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGtttt                                             >  1:307846/1‑140 (MQ=255)
                                                                                           tCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGCGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGCGTAATCGCGAACGTTGtttt                                             >  1:1997028/1‑140 (MQ=255)
                                                                                              ccTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGt                                          >  1:2126032/1‑140 (MQ=255)
                                                                                               cTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTa                                         <  2:307846/140‑1 (MQ=255)
                                                                                               cTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTa                                         <  1:772852/140‑1 (MQ=255)
                                                                                                tttATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTAc                                        <  1:2182650/140‑1 (MQ=255)
                                                                                                  tataACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCg                                      <  1:1039337/140‑1 (MQ=255)
                                                                                                       ccAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCTGTCAt                                 <  1:1628329/140‑1 (MQ=255)
                                                                                                        cAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATg                                <  2:1173819/140‑1 (MQ=255)
                                                                                                        cAAACTTCAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATg                                <  2:117641/140‑1 (MQ=255)
                                                                                                               cAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCaa                         <  1:286272/140‑1 (MQ=255)
                                                                                                               cAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCaa                         <  1:904097/140‑1 (MQ=255)
                                                                                                               cAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCaa                         <  2:551618/140‑1 (MQ=255)
                                                                                                               cAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCaa                         <  1:368222/140‑1 (MQ=255)
                                                                                                               cAGGACCAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCaa                         <  1:862594/140‑1 (MQ=255)
                                                                                                                    ccAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTgg                    <  1:46759/140‑1 (MQ=255)
                                                                                                                    ccAGGCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTgg                    <  1:1173346/140‑1 (MQ=255)
                                                                                                                       ggCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTa                 >  2:1921954/1‑140 (MQ=255)
                                                                                                                       ggCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTa                 >  1:2009956/1‑140 (MQ=255)
                                                                                                                        gCCATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAg                <  1:563232/140‑1 (MQ=255)
                                                                                                                          cATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGcc              <  2:1487116/140‑1 (MQ=255)
                                                                                                                          cATTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGcc              <  1:1778698/140‑1 (MQ=255)
                                                                                                                           aTTCAGGCCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCa             <  2:1997028/140‑1 (MQ=255)
                                                                                                                           aTTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCa             <  1:559571/140‑1 (MQ=255)
                                                                                                                           aTTCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCa             <  1:1751911/140‑1 (MQ=255)
                                                                                                                            ttCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAg            >  1:2168381/1‑140 (MQ=255)
                                                                                                                             tCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGa           <  2:2223941/140‑1 (MQ=255)
                                                                                                                             tCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGa           <  1:1913341/140‑1 (MQ=255)
                                                                                                                             tCAGACCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGa           >  1:453903/1‑140 (MQ=255)
                                                                                                                                 aCCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAg       >  1:1582852/1‑140 (MQ=255)
                                                                                                                                 aCCTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAg       >  2:289461/1‑140 (MQ=255)
                                                                                                                                  ccTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGa      >  2:1951604/1‑140 (MQ=255)
                                                                                                                                  ccTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGa      >  1:2065566/1‑140 (MQ=255)
                                                                                                                                  ccTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGa      >  2:1716982/1‑140 (MQ=255)
                                                                                                                                   cTTCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGaa     <  1:1677773/140‑1 (MQ=255)
                                                                                                                                     tCCAACGTTCGCAGATAGTGACCGAAGAAAGAATTGAAGATAGACACGAGTGCGATGATGGAAGACGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATTGACGCAAAGTGGTTAGCCAGATAAGAAAg   <  2:1288872/140‑1 (MQ=255)
                                                                                                                                     tCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAg   <  2:221967/140‑1 (MQ=255)
                                                                                                                                     tCCAACGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAg   <  2:260323/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
GTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTTCCAGCGTTCCCAGATAGTGACCGAAGAAAGATTTGAAGATAGCCACGAGTGCGATGATGGAAGCCGCATATTCCAGTGTAATCGCGAACGTTGTTTTGGTACCGGTCATGGACGCAAAGTGGTTAGCCAGATAAGAAAGC  >  NC_000913/3263866‑3264139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A