Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A16 F60 I1 R1	14	104.3	3578786	99.2%	3550155	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,844,169	C→A	A69D (GCT→GAT)	adeD →	adenine deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,844,169	0	C	A	100.0%	528.7 / NA	152	A69D (GCT→GAT)	adeD	adenine deaminase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (78/74); total (78/74)

Only 100 of 156 total aligned reads displayed.

TCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGCTCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGAAACCGCTACCCTGCCGCGCGGCCTGACGAC  >  NC_000913/3844033‑3844304

tCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATcc                                                                                                                                      >  2:401854/1‑140 (MQ=255)

     tGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCtt                                                                                                                                 >  2:1552332/1‑140 (MQ=255)

      ggCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCttt                                                                                                                                >  2:696309/1‑140 (MQ=255)

        cGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGc                                                                                                                              >  1:663562/1‑140 (MQ=255)

            gCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCg                                                                                                                          <  1:1343375/140‑1 (MQ=255)

                          tattatTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTcgcg                                                                                                            >  2:1414487/1‑140 (MQ=255)

                              attGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGgcgc                                                                                                        <  1:1504461/140‑1 (MQ=255)

                                tGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCaa                                                                                                      >  1:254995/1‑140 (MQ=255)

                                 gATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGTTcg                                                                                                              <  2:1475093/131‑1 (MQ=255)

                                 gATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGTTcg                                                                                                              >  1:1475093/1‑131 (MQ=255)

                                    aaTGTCTCTATTCTCGAGCTGATCAATGGCGGAGAAATTTCCAGCTCAATTGTGATTAAAGGTCGTTACATGGCCGGTGTTGTCGCAGAATACACTGAGGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAAcggc                                                                                                  <  2:429430/140‑1 (MQ=255)

                                    aaTGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAAcggc                                                                                                  >  1:811997/1‑140 (MQ=255)

                                    aaTGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAAcggc                                                                                                  <  1:279176/140‑1 (MQ=255)

                                      tGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAAcggcgg                                                                                                >  2:1461182/1‑140 (MQ=255)

                                       gTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAAcggcggg                                                                                               >  2:737083/1‑139 (MQ=255)

                                        tctcTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTg                                                                                              <  1:401854/140‑1 (MQ=255)

                                         ctctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGc                                                                                             <  2:573100/140‑1 (MQ=255)

                                         ctctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGc                                                                                             >  1:1041594/1‑140 (MQ=255)

                                         ctctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGc                                                                                             >  1:1276222/1‑140 (MQ=255)

                                          tctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTATAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGcc                                                                                            <  2:811771/140‑1 (MQ=255)

                                          tctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGcc                                                                                            >  1:332131/1‑140 (MQ=255)

                                          tctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGcc                                                                                            <  1:780724/140‑1 (MQ=255)

                                          tctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGcc                                                                                            >  2:639646/1‑140 (MQ=255)

                                          tctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGcc                                                                                            <  1:1497588/140‑1 (MQ=255)

                                           ctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCa                                                                                           <  1:991536/140‑1 (MQ=255)

                                           ctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCa                                                                                           <  1:355198/140‑1 (MQ=255)

                                           ctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCa                                                                                           <  2:1128786/140‑1 (MQ=255)

                                           ctATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCa                                                                                           <  2:332131/140‑1 (MQ=255)

                                            tATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAg                                                                                          >  2:1589106/1‑140 (MQ=255)

                                              ttCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAggg                                                                                        >  1:583893/1‑140 (MQ=255)

                                                  cGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGtttt                                                                                    >  1:161401/1‑139 (MQ=255)

                                                   gACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGcc                                                                                            >  2:1006005/1‑131 (MQ=255)

                                                   gACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGcc                                                                                            <  1:1006005/131‑1 (MQ=255)

                                                   gACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTAt                                                                                   >  2:1229030/1‑140 (MQ=255)

                                                   gACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTAt                                                                                   <  1:498857/140‑1 (MQ=255)

                                                   gACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGGTTAt                                                                                   >  1:417277/1‑140 (MQ=255)

                                                        gATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCCGGGGTTATTGATg                                                                              >  2:654448/1‑140 (MQ=255)

                                                        gATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATg                                                                              <  1:1709328/140‑1 (MQ=255)

                                                        gATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATg                                                                              >  1:451732/1‑140 (MQ=255)

                                                        gATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATg                                                                              >  1:860445/1‑140 (MQ=255)

                                                        gATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATg                                                                              <  2:292837/140‑1 (MQ=255)

                                                        gATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGGTTATTGATg                                                                              >  1:1055873/1‑140 (MQ=255)

                                                         aTCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGGGCCAGGGGTTTTTTAttg                                                                             >  2:967300/1‑138 (MQ=255)

                                                          tCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCt                                                                            <  1:742723/140‑1 (MQ=255)

                                                          tCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCt                                                                            <  1:1382553/140‑1 (MQ=255)

                                                          tCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCt                                                                            <  1:1307508/140‑1 (MQ=255)

                                                          tCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCt                                                                            <  2:451732/140‑1 (MQ=255)

                                                          tCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCt                                                                            <  2:583893/140‑1 (MQ=255)

                                                          tCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCt                                                                            <  1:1226105/140‑1 (MQ=255)

                                                          tCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCt                                                                            <  1:307253/140‑1 (MQ=255)

                                                          tCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCt                                                                            <  2:860445/140‑1 (MQ=255)

                                                           cAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGGTTAtttgtggtc                                                                           >  2:40492/1‑133 (MQ=255)

                                                             aTGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCCGGGGTTATTTATGCTCAc                                                                         >  2:1002850/1‑140 (MQ=255)

                                                             aTGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCAc                                                                         <  2:1619114/140‑1 (MQ=255)

                                                              tGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATg                                                                              <  2:104911/134‑1 (MQ=255)

                                                              tGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATg                                                                              >  1:104911/1‑134 (MQ=255)

                                                              tGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCAcc                                                                        >  1:32310/1‑140 (MQ=255)

                                                              tGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCAcc                                                                        >  2:1657708/1‑140 (MQ=255)

                                                              tGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGGTTATTTATGCTCAcc                                                                        >  1:1436018/1‑140 (MQ=255)

                                                               ggCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCt                                                                       <  1:1589106/140‑1 (MQ=255)

                                                                 cGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGGTGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGc                                                                     <  1:1755272/140‑1 (MQ=255)

                                                                 cGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGc                                                                     >  1:1114395/1‑140 (MQ=255)

                                                                 cGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGc                                                                     >  1:859935/1‑140 (MQ=255)

                                                                   gagaAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCat                                                                   >  1:980881/1‑140 (MQ=255)

                                                                   gagaAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCat                                                                   >  1:1001622/1‑140 (MQ=255)

                                                                   gagaAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCat                                                                   >  1:1177775/1‑140 (MQ=255)

                                                                   gagaAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGGTTATTGGTGCTcccccggat                                                                   >  2:209414/1‑135 (MQ=255)

                                                                   gagaAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGCGCCCGGGGTTATTGATGCTCACCCGCac                                                                   >  2:46073/1‑139 (MQ=255)

                                                                         tttCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGaa                                                             <  2:859935/140‑1 (MQ=255)

                                                                         tttCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGaa                                                             <  2:1114395/140‑1 (MQ=255)

                                                                           tCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATc                                                           <  2:521103/140‑1 (MQ=255)

                                                                            ccGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATcc                                                          <  1:1153011/140‑1 (MQ=255)

                                                                               gCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGc                                                       <  2:1440616/140‑1 (MQ=255)

                                                                               gCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGc                                                       <  2:1055873/140‑1 (MQ=255)

                                                                               gCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGc                                                       <  1:1376790/140‑1 (MQ=255)

                                                                                        tgATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACg                                              <  1:639646/140‑1 (MQ=255)

                                                                                        tgATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACg                                              <  1:542627/140‑1 (MQ=255)

                                                                                        tgATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACg                                              <  1:252133/140‑1 (MQ=255)

                                                                                         gATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGc                                             <  1:860600/140‑1 (MQ=255)

                                                                                             aaaGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGGTGCCCACCTGCATATTTAATCCAGCATGATGACGCCGGt                                         >  2:1297708/1‑140 (MQ=255)

                                                                                             aaaGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGt                                         <  2:254995/140‑1 (MQ=255)

                                                                                             aaaGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGt                                         <  2:726552/140‑1 (MQ=255)

                                                                                              aaGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTc                                        <  2:32310/140‑1 (MQ=255)

                                                                                                  aCGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACtt                                    >  1:19821/1‑140 (MQ=255)

                                                                                                    gTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACtttt                                  >  1:868849/1‑140 (MQ=255)

                                                                                                    gTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACtttt                                  >  1:290182/1‑140 (MQ=255)

                                                                                                    gTTACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGGTTATTGATGCTCACCTGCCTATTTAATCCAGCATGATGACGCCGGGCACcttt                                  >  2:886285/1‑140 (MQ=255)

                                                                                                      tACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGa                                <  1:569202/140‑1 (MQ=255)

                                                                                                      tACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGa                                <  2:1177775/140‑1 (MQ=255)

                                                                                                      tACATTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGa                                <  1:130341/140‑1 (MQ=255)

                                                                                                         aTTGCCGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGGTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGAAAc                             >  2:411187/1‑140 (MQ=255)

                                                                                                             ccGGTGTTGGCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGAAACCGCt                         <  1:1443438/140‑1 (MQ=255)

                                                                                                                     ggCGCAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGAAGCCGCTACCCTGcc                 >  2:754943/1‑140 (MQ=255)

                                                                                                                      gcgcAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGAAACCGCTACCCTGCcg                <  1:44807/140‑1 (MQ=255)

                                                                                                                        gcAGAATACACTGATGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGAAACCGCTACCCTGCcgcg              <  2:663562/140‑1 (MQ=255)

                                                                                                                         cAGAATACACTGACGATCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGAAACCGCTACCCTGCcgcgc             <  2:1041594/140‑1 (MQ=255)

                                                                                                                                 acTGATGATCCGGCTTTTCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGACATGGCTTATTTAAGCCCACCGACATATTGAAATCAGTTTGATGAAGCCCGAACCTTTTGAAACCCATAACCTCCCGAACGGCCCgaa     >  2:1666838/1‑139 (MQ=255)

                                                                                                                                   tgatgaTCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGTCACGGTTTCTTTGTGCCCACCTTCATATTTGATGCAGCATAAAAACGCCGGTCCCTTTTTAAAACCCTACCCCGCCGCGCGGCCTgacga   >  2:1327079/1‑140 (MQ=255)

                                                                                                                                   tgatgaTCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGAAACCGCTACCCTGCCGCGCGGCCTgacga   <  2:801925/140‑1 (MQ=255)

                                                                                                                                    gatgatCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGGTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGAAACCGCTACCCTGCCGCGCGGCCTgacgac  >  2:909099/1‑140 (MQ=255)

TCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGCCGGTGTTGGCGCAGAATACACTGATGCTCCGGCTTTGCAGCGGATTGATGCTCGCGGCGCAACGGCGGTGCCAGGGTTTATTGATGCTCACCTGCATATTGAATCCAGCATGATGACGCCGGTCACTTTTGAAACCGCTACCCTGCCGCGCGGCCTGACGAC  >  NC_000913/3844033‑3844304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A