Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F60 I1 R1	12	151.3	5185766	98.9%	5128722	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,564,951	(A)_5→4	coding (429/810 nt)	yffS →	CPZ‑55 prophage; uncharacterized protein YffS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,564,947	0	A	.	99.2%	519.3 / ‑0.5	125	coding (425/810 nt)	yffS	CPZ‑55 prophage; uncharacterized protein YffS
Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (63/60); total (65/60)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01

Only 100 of 140 total aligned reads displayed.

ACCGTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGA  >  NC_000913/2564809‑2565082

aCCGTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaa                                                                                                                                        <  2:2194386/140‑1 (MQ=255)

 ccGTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaaa                                                                                                                                       >  2:104249/1‑140 (MQ=255)

 ccGTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaaa                                                                                                                                       <  1:2402339/140‑1 (MQ=255)

 ccGTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaaa                                                                                                                                       >  2:1899334/1‑140 (MQ=255)

  cGTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaaaa                                                                                                                                      >  1:650521/1‑140 (MQ=255)

  cGTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaaaa                                                                                                                                      >  1:1580317/1‑140 (MQ=255)

  cGTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaaaa                                                                                                                                      >  1:1671215/1‑140 (MQ=255)

   gTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaaaag                                                                                                                                     >  1:1277649/1‑139 (MQ=255)

   gTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaaaag                                                                                                                                     >  2:1295649/1‑139 (MQ=255)

   gTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaaaag                                                                                                                                     >  1:380288/1‑139 (MQ=255)

   gTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaaaag                                                                                                                                     >  2:1467367/1‑139 (MQ=255)

   gTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGaaaag                                                                                                                                     >  1:2554939/1‑139 (MQ=255)

        gaAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGgaa                                                                                                                               <  2:1317501/140‑1 (MQ=255)

            tGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGgaaga                                                                                                                             >  2:645162/1‑138 (MQ=255)

            tGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGgaaga                                                                                                                             <  1:645162/138‑1 (MQ=255)

            tGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGG‑GGAAAAGTGGaagaag                                                                                                                           >  1:1971433/1‑140 (MQ=255)

               aaTTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTgg                                                                                                                        <  2:539077/140‑1 (MQ=255)

                   aCGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGgcagc                                                                                                                    >  1:1351062/1‑140 (MQ=255)

                     gcgAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGgc                                                                                                                       <  2:2147269/135‑1 (MQ=255)

                     gcgAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGgc                                                                                                                       >  1:2147269/1‑135 (MQ=255)

                      cgAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCaga                                                                                                                 >  2:2125518/1‑140 (MQ=255)

                      cgAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGG‑GGAAAAGTGGAAGAAGTGGCAGCaga                                                                                                                 >  2:1809247/1‑140 (MQ=255)

                        aGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGgc                                                                                                                       >  2:1568412/1‑132 (MQ=255)

                        aGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGgc                                                                                                                       <  1:1568412/132‑1 (MQ=255)

                        aGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGc                                                                                                               >  1:2052217/1‑140 (MQ=255)

                        aGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGc                                                                                                               <  2:1157548/140‑1 (MQ=255)

                                gCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGccc                                                                                                       <  1:749682/140‑1 (MQ=255)

                                  tGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCaa                                                                                                     <  1:7902/140‑1 (MQ=255)

                                  tGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCaa                                                                                                     <  1:1401003/140‑1 (MQ=255)

                                  tGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCaa                                                                                                     <  1:1996262/140‑1 (MQ=255)

                                   gAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAAc                                                                                                    >  1:1511594/1‑140 (MQ=255)

                                    aaCGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACg                                                                                                   >  1:2223227/1‑140 (MQ=255)

                                    aaCGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGT‑AAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACg                                                                                                   >  1:861735/1‑140 (MQ=255)

                                        agaTGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGa                                                                                               >  2:388821/1‑140 (MQ=255)

                                        agaTGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGa                                                                                               >  2:1903532/1‑140 (MQ=255)

                                          aTGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGaaa                                                                                             <  1:2303789/140‑1 (MQ=255)

                                             cTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAag                                                                                          <  2:380288/140‑1 (MQ=255)

                                              tattatCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAaga                                                                                         >  2:608539/1‑140 (MQ=255)

                                                 tatCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGAt                                                                                      <  1:2550544/140‑1 (MQ=255)

                                                 tatCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGAt                                                                                      <  1:2084120/140‑1 (MQ=255)

                                                     gacgacCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGa                                                                                  >  1:1219299/1‑140 (MQ=255)

                                                      acgacCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAg                                                                                 >  1:177397/1‑140 (MQ=255)

                                                       cgacCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGc                                                                                <  1:1377829/140‑1 (MQ=255)

                                                        gacCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCt                                                                               <  2:76531/140‑1 (MQ=255)

                                                          ccTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTaa                                                                             >  2:560598/1‑140 (MQ=255)

                                                             gAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGa                                                                          <  1:1899334/140‑1 (MQ=255)

                                                             gAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGa                                                                          <  2:1978752/140‑1 (MQ=255)

                                                             gAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGa                                                                          <  2:1614579/140‑1 (MQ=255)

                                                             gAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGa                                                                          <  1:1144909/140‑1 (MQ=255)

                                                              aaGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGATGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAg                                                                         <  1:734339/140‑1 (MQ=255)

                                                                   ccGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGt                                                                    <  2:1351062/140‑1 (MQ=255)

                                                                     gTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGa                                                                          <  1:2431211/132‑1 (MQ=255)

                                                                     gTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTa                                                                  >  2:445535/1‑140 (MQ=255)

                                                                     gTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTAGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTa                                                                  >  1:432840/1‑140 (MQ=255)

                                                                         cGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTaaccc                                                              <  2:2167549/140‑1 (MQ=255)

                                                                           cTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTaacccga                                                            <  2:2308953/140‑1 (MQ=255)

                                                                            tGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTaacccgaa                                                           >  2:2570480/1‑140 (MQ=255)

                                                                            tGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTaacccgaa                                                           >  2:2513131/1‑140 (MQ=255)

                                                                             gAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTaacccgaac                                                          >  2:1016811/1‑140 (MQ=255)

                                                                                cTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTaacccgaacccg                                                       >  2:1745084/1‑140 (MQ=255)

                                                                                   gAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGaaa                                                    >  2:1272949/1‑140 (MQ=255)

                                                                                   gAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGaaa                                                    >  1:512961/1‑140 (MQ=255)

                                                                                   gAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGaaa                                                    >  2:566350/1‑140 (MQ=255)

                                                                                    aGGCGGCACTAGCAAATAAACAAGTCCCAGCAGATGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGaaaa                                                   >  1:488801/1‑140 (MQ=255)

                                                                                    aGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGaaaa                                                   >  2:2117751/1‑140 (MQ=255)

                                                                                          cACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACa                                             >  2:2271026/1‑140 (MQ=255)

                                                                                             tAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCg                                          <  1:1764929/140‑1 (MQ=255)

                                                                                             tAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCg                                          <  2:2554939/140‑1 (MQ=255)

                                                                                             tAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCg                                          <  1:2208332/140‑1 (MQ=255)

                                                                                                 aaaTAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCGACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCgg                                      <  1:1001497/140‑1 (MQ=255)

                                                                                                 aaaTAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCgg                                      <  1:496222/140‑1 (MQ=255)

                                                                                                  aaTAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGc                                     <  1:1745084/140‑1 (MQ=255)

                                                                                                    tAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAt                                   <  1:1552265/140‑1 (MQ=255)

                                                                                                    tAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAt                                   >  2:2434364/1‑140 (MQ=255)

                                                                                                    tAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGAGGAAGAAGCGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGCGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAt                                   >  1:1479009/1‑140 (MQ=255)

                                                                                                     aaaCAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAtg                                  <  2:1971433/140‑1 (MQ=255)

                                                                                                         aaGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAtgttgt                              >  1:454592/1‑140 (MQ=255)

                                                                                                         aaGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAtgttgt                              >  2:651334/1‑140 (MQ=255)

                                                                                                         aaGTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAACTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCAtgttgt                              >  2:2388775/1‑140 (MQ=255)

                                                                                                           gTCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTgtgt                            >  2:1873027/1‑140 (MQ=255)

                                                                                                            tCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTc                           >  2:1720077/1‑140 (MQ=255)

                                                                                                            tCCCAGCAGAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTc                           >  1:584511/1‑140 (MQ=255)

                                                                                                                agcagAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGt                       >  2:1803090/1‑140 (MQ=255)

                                                                                                                agcagAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGt                       <  1:388821/140‑1 (MQ=255)

                                                                                                                agcagAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGt                       <  2:738629/140‑1 (MQ=255)

                                                                                                                agcagAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGt                       <  1:445535/140‑1 (MQ=255)

                                                                                                                 gcagAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTa                      <  1:541393/140‑1 (MQ=255)

                                                                                                                 gcagAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTa                      >  1:46408/1‑140 (MQ=255)

                                                                                                                  cagAAGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTAc                     <  1:2065516/140‑1 (MQ=255)

                                                                                                                     aaGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTgg                  >  2:1723961/1‑140 (MQ=255)

                                                                                                                     aaGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTgg                  >  1:145493/1‑140 (MQ=255)

                                                                                                                     aaGCGGAAGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTgg                  >  2:1490823/1‑140 (MQ=255)

                                                                                                                           aaGAGATGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCaa            >  2:153045/1‑140 (MQ=255)

                                                                                                                               gaTGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATggg        <  1:2152509/140‑1 (MQ=255)

                                                                                                                               gaTGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATggg        <  2:451476/140‑1 (MQ=255)

                                                                                                                               gaTGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATggg        <  2:1511594/140‑1 (MQ=255)

                                                                                                                                 tGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTgg                  <  2:265074/128‑1 (MQ=255)

                                                                                                                                 tGGGAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTgg                  >  1:265074/1‑128 (MQ=255)

                                                                                                                                   ggAGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGggcggc    >  2:1159800/1‑140 (MQ=255)

                                                                                                                                     aGGTG‑AAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGa  >  1:2573363/1‑140 (MQ=255)

ACCGTGGAGAAATGGAATTACGCGAGGCTGTAGCTGAACGAGATGCTATTATCGACGACCTGAAGGCCCGTATCGCTGAGCTTGAGGCGGCACTAGCAAATAAACAAGTCCCAGCAGAAGCGGAAGAGATGGGAGGTGAAAAAGTGGAAGAAGTGGCAGCAGAGCAAGCGCCCAACGATGAAAAAGAGATGGGAGCTAAGGAGTGGGTTAACCCGAACCCGAAAAAATACAGCGTCGGCATGTTGTGTCAGGTACTGGCTGCAATGGGCGGCGA  >  NC_000913/2564809‑2565082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A