Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F60 I1 R1
|
11 |
121.0 |
4111496 |
98.9% |
4066269 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,969,316 |
G→T |
intergenic (‑339/+14) |
rppH ← / ← ygdT |
RNA pyrophosphohydrolase/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,969,316 | 0 | G | T | 99.3%
| 491.5
/ ‑5.4
| 137 | intergenic (‑339/+14) | rppH/ygdT | RNA pyrophosphohydrolase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (80/56); total (81/56) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 137 total aligned reads displayed.
ACTACGGGAAAACCCGGAGCATTCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGTTTTTCACAGT > NC_000913/2969180‑2969451
|
actacGGGAAAACCCGGAGCATTCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGt < 1:1482366/140‑1 (MQ=255)
ctacGGGAAAACCCGGAGCATTCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGtt < 1:1494393/140‑1 (MQ=255)
gggAAAACCCGGAGCATTCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCg > 1:516828/1‑140 (MQ=255)
gggAAAACCCGGAGCATTCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCg < 2:1182379/140‑1 (MQ=255)
ggAAAACCCGGAGCATTCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGa > 1:322230/1‑140 (MQ=255)
ggAAAACCCGGAGCATTCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGa < 1:1817443/140‑1 (MQ=255)
ggAAAACCCGGAGCATTCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGa > 2:1946095/1‑140 (MQ=255)
ggAAAACCCGGAGCATTCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACATCTCATTTACTGGTTGGCGa > 2:850165/1‑140 (MQ=255)
ggAAAACCCGGAGCATTCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCATGACCCAGGTCACACCTCTCATTTACTGGTTGGCGa > 2:1362069/1‑140 (MQ=255)
ttCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGc > 1:1508659/1‑140 (MQ=255)
tCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGcc > 2:210087/1‑140 (MQ=255)
cTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCg < 1:417152/140‑1 (MQ=255)
cTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCg < 1:601510/140‑1 (MQ=255)
cTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCg < 1:894069/140‑1 (MQ=255)
cTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCg > 1:1799876/1‑140 (MQ=255)
aaGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTa < 2:1131164/140‑1 (MQ=255)
gCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATc > 2:1389971/1‑140 (MQ=255)
cccGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATcc > 2:1472371/1‑140 (MQ=255)
ccGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCca < 2:1576237/140‑1 (MQ=255)
atatAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAg > 2:1805953/1‑140 (MQ=255)
atatAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAg > 2:340537/1‑140 (MQ=255)
taGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAt < 2:1383283/140‑1 (MQ=255)
aGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAtg < 2:1289658/140‑1 (MQ=255)
aGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAAtg < 1:1570818/140‑1 (MQ=255)
aCATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGACCAACCAATGCCGTATTTATCCACAGAAtgtg < 2:672482/140‑1 (MQ=255)
ttttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCa < 2:1027360/140‑1 (MQ=255)
tttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCAc > 2:613970/1‑140 (MQ=255)
tttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCAc > 1:953889/1‑140 (MQ=255)
ttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACt > 2:586991/1‑140 (MQ=255)
ttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACt < 2:268300/140‑1 (MQ=255)
ttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACt < 1:578094/140‑1 (MQ=255)
ttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACt > 2:1728521/1‑140 (MQ=255)
ttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACt < 2:979846/140‑1 (MQ=255)
ttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACt < 1:1262639/140‑1 (MQ=255)
ttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACt > 1:1259710/1‑140 (MQ=255)
ttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACt > 1:1044511/1‑140 (MQ=255)
ttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGGGCCACt > 1:831465/1‑140 (MQ=255)
ttAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGCCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACt > 2:356561/1‑140 (MQ=255)
atTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTaa > 1:1678673/1‑140 (MQ=255)
tCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGc > 1:99079/1‑140 (MQ=255)
tCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGc > 2:1948511/1‑140 (MQ=255)
cATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCa < 2:380795/140‑1 (MQ=255)
aTTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCAc > 2:185067/1‑140 (MQ=255)
tATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTg < 1:210087/140‑1 (MQ=255)
tCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGTACTGaa < 2:60494/140‑1 (MQ=255)
tCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGaa < 1:50825/140‑1 (MQ=255)
tCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGaa < 2:1179266/140‑1 (MQ=255)
cAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGGATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAAc > 1:539465/1‑140 (MQ=255)
gTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCa > 2:369988/1‑140 (MQ=255)
aaTGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTa < 1:1362069/140‑1 (MQ=255)
tGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTaaa > 2:865108/1‑140 (MQ=255)
tGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTaaa > 2:864326/1‑140 (MQ=255)
tGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTaaa > 2:1046449/1‑140 (MQ=255)
tGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTaaa > 1:166847/1‑140 (MQ=255)
ttACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACt > 1:1627937/1‑140 (MQ=255)
tACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTg > 1:1385046/1‑140 (MQ=255)
aCATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTgg > 1:1008436/1‑140 (MQ=255)
aTGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAg < 1:1046449/140‑1 (MQ=255)
gTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGtt > 2:1143695/1‑140 (MQ=255)
gTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGtt > 1:1123904/1‑140 (MQ=255)
gTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGtt > 1:94029/1‑140 (MQ=255)
aaTTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTtc > 2:354396/1‑140 (MQ=255)
aaTTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTtc > 2:730930/1‑140 (MQ=255)
tttAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTtcgtc > 2:732796/1‑140 (MQ=255)
ttAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTtcgtcg < 2:562817/140‑1 (MQ=255)
ttAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTtcgtcg < 1:1227371/140‑1 (MQ=255)
ttAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTtcgtcg < 1:692786/140‑1 (MQ=255)
aGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCa > 1:724762/1‑140 (MQ=255)
aGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCa > 1:718657/1‑140 (MQ=255)
gTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCAc > 2:12983/1‑140 (MQ=255)
aTGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTc > 2:674108/1‑140 (MQ=255)
tGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCa < 1:193778/140‑1 (MQ=255)
aaaaaGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAg > 1:1147272/1‑140 (MQ=255)
agagTAATTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTg < 1:1805953/140‑1 (MQ=255)
aaTTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAAt < 2:1008436/140‑1 (MQ=255)
aaTTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAAt > 2:638645/1‑140 (MQ=255)
aaTTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAAt < 1:732796/140‑1 (MQ=255)
aTTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCa > 2:1728159/1‑128 (MQ=255)
aTTCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATg > 2:251824/1‑140 (MQ=255)
tCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGa < 1:185067/140‑1 (MQ=255)
tCGTGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGa < 2:1144283/140‑1 (MQ=255)
tGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAAc < 1:1161136/140‑1 (MQ=255)
tGACCCAGGTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAAc < 2:715558/140‑1 (MQ=255)
ggTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTg < 2:1259710/140‑1 (MQ=255)
ggTCACACCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTg > 1:1424364/1‑140 (MQ=255)
cacaCCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAg < 2:1799876/140‑1 (MQ=255)
cacaCCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAg < 1:1406972/140‑1 (MQ=255)
acacCTCTCATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAgg < 1:2040447/140‑1 (MQ=255)
tctcATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGttttt > 1:750702/1‑140 (MQ=255)
tctcATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGttttt < 1:1989372/140‑1 (MQ=255)
ctcATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGTTTTTc > 1:547403/1‑140 (MQ=255)
ctcATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGTTTTTc > 1:132732/1‑140 (MQ=255)
tcATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTgg < 2:626743/130‑1 (MQ=255)
tcATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTgg > 1:626743/1‑130 (MQ=255)
tcATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGTTTTTca > 2:353679/1‑140 (MQ=255)
tcATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGTTTTTca > 2:2001530/1‑140 (MQ=255)
tcATTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGTTTTTca > 1:170361/1‑140 (MQ=255)
aTTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGTTTTTcaca > 2:274807/1‑140 (MQ=255)
aTTTACTGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGTTTTTcaca < 2:1461747/140‑1 (MQ=255)
aTTTACGGGTTGGCGAAAGATCAACCAATGCCTTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGCGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGTTTTTcaca > 2:946683/1‑140 (MQ=255)
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ACTACGGGAAAACCCGGAGCATTCTGAATAAGCCCGATATAGACATTTTAAAATATTCATTATCAGTCAATGCATTACATGTAATTTTAGTAATGAAAAAGAGTAATTCGTGACCCAGGTCACACCTCTCATTTACGGGTTGGCGAAAGATCAACCAATGCCGTATTTATCCACAGAATGTGCCACTAAGTTAAGCACTGAACCACTAAAAACTGGAGTTTCGTCGCACGTCAAGGCTGTAAATGGAAACAGTAGTGGAGGTTTTTCACAGT > NC_000913/2969180‑2969451
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
