Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A21 F60 I1 R1 11 116.6 3946732 99.1% 3911211 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,455,548 (A)5→4 coding (99/564 nt) yfcV ← putative fimbrial protein YfcV

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,455,5440A.100.0% 446.3 / NA 104coding (103/564 nt)yfcVputative fimbrial protein YfcV
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (56/48);  total (56/48)

Only 100 of 115 total aligned reads displayed.

TCTTGCAGGCGAATCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTAAAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAATTAAAATA  >  NC_000913/2455405‑2455678
                                                                                                                                           |                                                                                                                                      
tCTTGCAGGCGAATCTGGAAATTTTTCGGCTTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTa                                                                                                                                        >  2:1942727/1‑140 (MQ=255)
  ttGCAGGCGAATCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTaaa                                                                                                                                      <  2:512488/140‑1 (MQ=255)
  ttGCAGGCGAATCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTaaa                                                                                                                                      >  2:97840/1‑140 (MQ=255)
  ttGCAGGCGAATCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTaaa                                                                                                                                      <  1:577006/140‑1 (MQ=255)
  ttGCAGGCGAATCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTaaa                                                                                                                                      <  1:513998/140‑1 (MQ=255)
    gCAGGCGAATCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTaaaac                                                                                                                                    <  2:1901784/140‑2 (MQ=255)
      aGGCGAATCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTaaaacgt                                                                                                                                  >  2:920097/1‑137 (MQ=255)
       ggCGAATCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTaaaacgtg                                                                                                                                 <  1:465490/140‑5 (MQ=255)
          gAATCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAg                                                                                                                             >  1:249912/1‑140 (MQ=255)
          gAATCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAg                                                                                                                             >  1:5252/1‑140 (MQ=255)
            aTCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTaaaac                                                                                                                                    <  1:1470051/132‑2 (MQ=255)
            aTCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTaaaac                                                                                                                                    >  2:1470051/1‑131 (MQ=255)
            aTCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTa                                                                                                                           <  2:1957372/140‑1 (MQ=255)
            aTCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTa                                                                                                                           <  2:195128/140‑1 (MQ=255)
               tGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCg                                                                                                                        <  1:81654/140‑1 (MQ=255)
                 gAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCgtt                                                                                                                      <  2:791517/140‑1 (MQ=255)
                       tttCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTACAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTAcc                                                                                                                >  1:342497/1‑140 (MQ=255)
                                   ggtgCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGAttgt                                                                                                    <  2:744685/140‑1 (MQ=255)
                                   ggtgCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGAttgt                                                                                                    <  2:591715/140‑1 (MQ=255)
                                     tgCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGAttgttg                                                                                                  <  1:97840/140‑1 (MQ=255)
                                       ccGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTA‑CCGCAGCGATTGTTGCCg                                                                                               >  1:1184741/1‑140 (MQ=255)
                                        cGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCg                                                                                               <  1:266706/140‑1 (MQ=255)
                                         gTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGt                                                                                              <  2:105921/140‑1 (MQ=255)
                                          ttATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTa                                                                                             >  2:1488575/1‑140 (MQ=255)
                                          ttATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTa                                                                                             >  2:530789/1‑140 (MQ=255)
                                            aTTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTaga                                                                                           >  1:171863/1‑140 (MQ=255)
                                              ttttCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAgg                                                                                         <  1:78499/140‑1 (MQ=255)
                                              ttttCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAgg                                                                                         >  2:695339/1‑140 (MQ=255)
                                               tttCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGt                                                                                        >  2:211655/1‑140 (MQ=255)
                                                   aGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAAc                                                                                    <  2:5252/140‑1 (MQ=255)
                                                   aGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTA‑CCGCAGCGATTGTTGCCGTAGAGGTGAAcg                                                                                   <  2:1184741/140‑1 (MQ=255)
                                                    gTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAAcg                                                                                   <  1:990909/140‑1 (MQ=255)
                                                    gTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAAcg                                                                                   >  1:957069/1‑140 (MQ=255)
                                                      ttttCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTCCCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAAcgcg                                                                                 <  2:712490/140‑1 (MQ=255)
                                                      ttttCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAAcgcg                                                                                 <  2:768972/140‑1 (MQ=255)
                                                      ttttCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAAcgcg                                                                                 <  1:1942727/140‑1 (MQ=255)
                                                      ttttCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAAcgcg                                                                                 <  1:327516/140‑1 (MQ=255)
                                                       tttCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACgcgc                                                                                >  1:939653/1‑140 (MQ=255)
                                                        ttCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGcc                                                                               >  1:1317277/1‑140 (MQ=255)
                                                                 gATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCAt                                                                      <  1:530789/140‑1 (MQ=255)
                                                                     tCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGcc                                                                  <  1:1716739/140‑1 (MQ=255)
                                                                      cACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTCCCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCg                                                                 <  2:427411/140‑1 (MQ=255)
                                                                       aCCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCgc                                                                <  2:939653/140‑1 (MQ=255)
                                                                       aCCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCgc                                                                <  2:541037/140‑1 (MQ=255)
                                                                       aCCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCgc                                                                >  1:344918/1‑140 (MQ=255)
                                                                          cATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGTACGCGCCCATCACCATTGCCgcagc                                                             >  1:979087/1‑140 (MQ=255)
                                                                          cATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCgcagc                                                             >  2:890990/1‑140 (MQ=255)
                                                                            tatCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCaa                                                           >  2:529768/1‑140 (MQ=255)
                                                                             atCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAAt                                                          >  1:97990/1‑140 (MQ=255)
                                                                             atCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAAt                                                          >  2:27567/1‑140 (MQ=255)
                                                                             atCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAAt                                                          >  1:656523/1‑140 (MQ=255)
                                                                             atCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAAt                                                          >  2:787179/1‑140 (MQ=255)
                                                                                   ttCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGt                                                    >  1:1224127/1‑140 (MQ=255)
                                                                                   ttCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGt                                                    >  1:334588/1‑140 (MQ=255)
                                                                                       aGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTa                                                >  2:596900/1‑140 (MQ=255)
                                                                                       aGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTa                                                >  2:637579/1‑140 (MQ=255)
                                                                                        gTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTaa                                               >  2:1479613/1‑140 (MQ=255)
                                                                                        gTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTaa                                               >  2:1787104/1‑140 (MQ=255)
                                                                                         tttGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAAc                                              >  1:874767/1‑140 (MQ=255)
                                                                                          ttGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACa                                             >  2:1810502/1‑140 (MQ=255)
                                                                                           tgtgATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACaa                                            >  2:1264115/1‑140 (MQ=255)
                                                                                             tgATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAAc                                          >  1:670024/1‑140 (MQ=255)
                                                                                              gATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACt                                         <  2:1637617/140‑1 (MQ=255)
                                                                                                tCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTa                                       <  2:1386963/140‑1 (MQ=255)
                                                                                                tCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTa                                       <  1:862052/140‑1 (MQ=255)
                                                                                                tCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTa                                       <  2:334588/140‑1 (MQ=255)
                                                                                                  gTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACt                                     <  1:890990/140‑1 (MQ=255)
                                                                                                  gTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACt                                     <  2:1317277/140‑1 (MQ=255)
                                                                                                   tCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTc                                    <  1:211655/140‑1 (MQ=255)
                                                                                                   tCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTc                                    <  1:1354119/140‑1 (MQ=255)
                                                                                                         aCGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCattatt                              <  2:1224127/140‑1 (MQ=255)
                                                                                                         aCGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCattatt                              <  2:874767/140‑1 (MQ=255)
                                                                                                         aCGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCattatt                              <  2:342497/140‑1 (MQ=255)
                                                                                                         aCGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCattatt                              <  1:529768/140‑1 (MQ=255)
                                                                                                         aCGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCattatt                              <  2:1280820/140‑1 (MQ=255)
                                                                                                         aCGATAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATAGCCGCAGCACTAGCTGTTTTAACAAACTTACTCattatt                              <  2:979087/140‑1 (MQ=255)
                                                                                                            aTAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGt                           >  1:393234/1‑140 (MQ=255)
                                                                                                             tAGAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTc                          >  2:407837/1‑140 (MQ=255)
                                                                                                               gAACACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCt                        <  2:670024/140‑1 (MQ=255)
                                                                                                                aaCACACTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCtt                       <  1:133639/140‑1 (MQ=255)
                                                                                                                 acacacTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTa                      <  1:551311/140‑1 (MQ=255)
                                                                                                                    cacTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAAc                   >  2:1129773/1‑140 (MQ=255)
                                                                                                                     acTGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACt                  >  2:1159705/1‑140 (MQ=255)
                                                                                                                       tGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACtat                >  1:742563/1‑140 (MQ=255)
                                                                                                                       tGAGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCACAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACtat                >  2:1590255/1‑140 (MQ=255)
                                                                                                                         aGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTataa              >  2:618285/1‑140 (MQ=255)
                                                                                                                         aGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTataa              >  1:1773699/1‑140 (MQ=255)
                                                                                                                         aGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTataa              >  2:1542984/1‑140 (MQ=255)
                                                                                                                         aGTCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTataa              >  2:496494/1‑140 (MQ=255)
                                                                                                                           tCTTCAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTataaat            >  2:620245/1‑140 (MQ=255)
                                                                                                                               cAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAAtt        <  1:556045/140‑1 (MQ=255)
                                                                                                                               cAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAAtt        <  1:407837/140‑1 (MQ=255)
                                                                                                                               cAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAAtt        <  1:695339/140‑1 (MQ=255)
                                                                                                                               cAATGGTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAAtt        <  1:1109235/140‑1 (MQ=255)
                                                                                                                                   ggTGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAATTaaaa    >  1:286251/1‑140 (MQ=255)
                                                                                                                                     tGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAAtt        >  2:841829/1‑134 (MQ=255)
                                                                                                                                     tGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAAtt        <  1:841829/134‑1 (MQ=255)
                                                                                                                                     tGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAATTAAAata  >  2:772945/1‑140 (MQ=255)
                                                                                                                                     tGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAATTAAAata  >  1:292629/1‑140 (MQ=255)
                                                                                                                                     tGCCGT‑AAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAATTAAAata  >  2:1530748/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                      
TCTTGCAGGCGAATCTGGAAATTTTTCGGCGTGGTGGTGCCGTTATTTTTCAGTTTTTCGGCACCGATATCACCCATATCAACTTCCAGTTTGTGATCGTCCGGAACGATAGAACACACTGAGTCTTCAATGGTGCCGTAAAAACGTGCAGTACCGTTGTTACCCGCAGCGATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTGTCCTTAAACTATAAATAATTAAAATA  >  NC_000913/2455405‑2455678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A